This page lists unreviewed pages on this wiki, which have not yet been compared to their counterparts from the old wiki to ensure they look as good or better than before. It was originally part of the “Great Wiki Launch” editing sprint of June 1-4, 2021, but the list remains useful for vetting pages that still have not been checked.
Pages on the site
As we review pages and mark them done, they will automatically disappear from the Pages remaining list, and advance the progress bar. Our goal is to review every page by the end of Friday, June 4! WE CAN DO IT! 💪
Pages remaining
- Finer Grained Debian Packages
- Debugging
- Debugging Exercises
- Developing ImageJ in Eclipse
- Gradle
- IDEs
- Unit tests for ImageJ1
- How to contribute to an existing plugin or library
- Development
- Developing ImageJ in IntelliJ IDEA
- Javassist
- Kotlin
- Logging
- Using Maven with Eclipse
- MiniMaven
- Developing ImageJ in NetBeans
- Supported Compilers
- TensorFlow-GPU
- UpdaterV1
- UpdaterV2
- Using Weka
/develop
- Migrating from DokuWiki
/editing
- 2008 Hackathon in Dresden
- 2011 Hackathon in Madison
- Conference 2006
- Conference 2008
- Conference 2010
- Conference 2012
- Conferences
- Hackathon
- I2K 2018
- Image Processing School Pilsen 2009
- Upcoming Events
- ISBI 2012
- Segmentation of neuronal structures in EM stacks challenge - ISBI 2012
/events
- Conference 2015 Hackathon
- Conference 2015 Program
/events/conference-2015
- GSoC 2011 Ideas
/events/gsoc-2011
- Particle Analysis
- Registration
- Segmentation
- Spatial Calibration
- Stack-slice Manipulations
- T-functions
- Thresholding
- Tracking
- Visualization
- Voxelization
- Watershed Separation
- Z-functions
/imaging
- Comparison of Matlab functions and Ops
- Ops Deconvolution
- ImageJ Ops
/libs/imagej-ops
- ImgLib1
- ImgLib1: Iterating through pixel data
- Using ImgLib1 in an ImageJ plugin
- Into ImgLib - Generic Image Processing in Java
/libs/imglib1
- ImgLib2 - Accessibles
- ImgLib2 Algorithms
- ImgLib2 Benchmarks
- Changes from ImgLib1 to ImgLib2
- Developing ImgLib2
- ImgLib2 Documentation
- ImgLib2 FAQ
- Gauss package for ImgLib2
- LoopBuilder
- Creating Imglib2 images in MATLAB
- Imglib2 Morphological Operations
- ImgLib2 - Advanced Programming Workshop
/libs/imglib2
- Bob Hanson
- Shang Jyun Lin
- Till Bretschneider
- Kai Schleicher
- Daniel E. Maidana
- Timothy Grocott
- Charalambos Rossides
- Benjamin Wilhelm
- IMBMicroscopy
- James C. Sears
- Joe Napoli
- Michal Karm Babacek
- Misha Kudryashev
- Martin Čapek
- Lasse Wollatz
- Lee Kamentsky
- Lionel Dupuy
- Marco Tarasco
- Juan Pablo
- Nathan Hotaling
- Gavin Minty
- Nicholas Condon
- Pablo Vicente-Munuera
- Pedro Gomez-Galvez
- Rainer Heintzmann
- Simone Reber
- Stephan Janosch
- Stephan Preibisch
- Julien Cochennec
- Volker Gatterdam
- Weisong Zhao
- Yaman al-Yousof
- Albert Cardona
- Antonio Carlos da Silva Senra Filho
- Astha Jaiswal
- Alessandro Felder
- Alexander Krull
- Alexandre Bastien
- Andrew McCall
- Stanislav Chizhik
- Audrey Karperien
- Alison Walter
- Piotr Baniukiewicz
- Benjamin Schmid
- Benoit Lombardot
- Ben Booth
- Birgit Möller
- BioVoxxel
- Beat Münch
- Benjamin Nanes
- Brian Northan
- Blair Rossetti
- Ben Tupper
- David Pinto
- Cameron Arshadi
- Daniel James White
- Carsten Haubold
- Christoph Hentschel
- Claudia Carabana Garcia
- Kota Miura
- Carlos Oscar S. Sorzano
- Cyril TURIÈS
- Damien Ramunno-Johnson
- Daniel Sage
- David Hovis
- David Colameo
- Demis D. John
- Christian Dietz
- Dimiter Prodanov
- Dylan Jeonghwan Son
- Niko Ehrenfeuchter
- Eugene Katrukha
- Erik Meijering
- Eric Barnhill
- Fabrice Cordelieres
- Fabio Rojas Rusak
- Florian Jug
- Deborah Schmidt
- Erwin Frise
- Jan Funke
- Gabriel Einsdorf
- Giovanni Cardone
- Hadrien Mary
- Robert Haase
- Philipp Hanslovsky
- Helder C. R. de Oliveira
- HongKee Moon
- David Hörl
- Ignacio Arganda-Carreras
- Irving Hernández
- Ilan Tal
- Wilhelm Burger
- Contributors
- Ivo F. Sbalzarini
- Jim Schaff
- Gregory Jefferis
- Jerome Parent
- Jiri Janacek
- Joost Willemse
- Jarek Sacha
- Jan Schier
- Kai Uwe Barthel
- Varun Kapoor
- Kyle Harrington
- Karl-Heinz Kunzelmann
- Kevin Mader
- Kouichi C. Nakamura
- Krzysztof Gonciarz
- Olivier Burri
- Gabriel Landini
- Alan Brooks
- Larry Lindsey
- Leonard Dobens
- Les Foster
- Lennart Hilbert
- Benjamin Smith
- Luis Escudero
- Michael Entrup
- Jan Martens
- Matthias Arzt
- Thomas Boudier
- Michael Doube
- Melissa Linkert
- Mai Elfarnawany
- Mark Longair
- Klim Kolyvanov
- Michael Majurski
- Jerome Mutterer
- Marwan Zouinkhi
- Nick Perry
- Nico Stuurman
- Cronin Seynnes
- Norbert Vischer
- Nicolas Stifani
- Yu Liu
- Pariksheet Nanda
- Paolo Miocchi
- Yili Zhao
- George Patterson
- Peter C. Marks
- Daniel Hornung
- Wayne Rasband
- Richard Domander
- Robert Bryson-Richardson
- Samuel Yang
- Xiaochun Xu
- Samuel Inverso
- Ulrik Günther
- Shaohe Wang
- Sean Parsons
- Stefan Helfrich
- Steven J. West
- Luke Stuyvenberg
- Ian Sweeney
- Vitor Vaz da Silva
- Tiago Ferreira
- Matt McCormick
- Thorsten Wagner
- Tim-Oliver Buchholz
- Jean-Yves Tinevez
- Grant Harris
- Tom Kazimiers
- Gabriella Turek
- Victor Caldas
- Verena Kaynig-Fittkau
- Volker Baecker
- Virginie Uhlmann
- T. Vuillaume
- William Hirst
- Martin Ovesný
/people
- 2D Histogram
- 3D Binary Filters
- 3D Blob Segmentation
- 3D cyclorama
- 3D Objects Counter
- 3D Segmentation
- 3D Surface Plot
- 3Dscript
- 3View import list
- ActionBar
- ActogramJ
- Adaptive Median Filter
- Adelson's Squares
- Adiposoft
- Align Image by line ROI
- Align RGB planes
- Anaglyph for Red Cyan glasses
- Analyze Stripes
- Anisotropic Diffusion 2D
- Anomalous Diffusion Filters
- AplimTools
- Archipelago Plugins
- Arrow
- Atlas Toolkit
- Auto Crop
- Auto Local Threshold
- Auto Threshold
- Automatic detection of neuronal labeling in histological image series
- Automatic optimal filament segmentation
- Average Images
- AxoNet
- Background Subtractor
- Balloon
- BAR
- Batch Processor
- BigDataProcessor
- BigDataProcessor2
- Biomat
- BIOP Lookup Tables
- BioVoxxel Toolbox
- Bleach Correction
- Blend two images
- Blind Analysis Tools
- Block Matching
- BoneJ1
- BUnwarpJ
- CElegansBeadsAnalysis plugin
- Calc dSpace
- Calculator Plus
- CAMDU
- CARE
- CATS
- Cell Counter
- Cell detector
- Celsius to fahrenheit
- Enhance Local Contrast (CLAHE)
- Classic Watershed
- ClearVolume
- CLIJ
- Cluster Analysis
- CMP-BIA tools
- Coloc 2
- Colocalization by Cross Correlation
- Colocalization Image Creator
- Colocalization Object Counter
- Colocalization Test
- Colocalization Threshold
- Colocalize
- Color Histogram
- Color Inspector 3D
- Colorizer Overlay
- Colour Deconvolution
- Colour merge
- Compute Curvatures
- Contour Lines
- Copy Pixel Size
- Correct 3D Drift
- Cover Maker
- CPU Meter
- Crop (3D)
- Cross Sectional Analyzer
- CSBDeep
- CSIMLab
- Deep Zoom
- DeepClas4Bio
- DeformationTracker
- Deforming Mesh 3D
- Delaunay Voronoi
- Delayed Snapshot
- DenoiSeg
- Descriptor based registration
- Descriptor-based registration (2d/3d)
- Detrendr
- DiameterJ
- Dichromacy
- DICOM open
- Differentials
- Diffraction PSF 3D
- Directionality
- Distance Analysis
- Distance Transform 3D
- Distance Transform Watershed
- Dithering
- Docker
- DS4H Image Alignment
- Dynamic Kymograph
- Dynamic Reslice
- Edge and symmetry filter
- Elastic Alignment and Montage
- Elastix
- Ellipse split
- EpiGraph
- Extended Depth of Field
- EzFig
- FAST
- Feature Extraction
- FeatureJ
- FigureJ
- Fiji Developer
- Fiji Logo 3D
- Fiji Plugins
- Fiji/Z-Spacing Correction
- FijiArchipelago
- FijiRelax
- FijiWings
- Fijiyama
- FilamentDetector
- Find Connected Regions
- Find Dimension of Raw Image
- Find Peaks
- FITS Analysis
- FLIMJ
- FlowJ
- Fourier Ring Correlation Plugin
- Fpbioimage
- Frames
- Frangi
- FS Align TrakEM2
- Fuzzy Set Intensity Transformations
- Gabriel Graph
- GDSC-SMLM2
- Get dSpace
- Get Meta
- Glasbey
- Gnu Plot
- Granulometric Filtering
- Graph Cut
- Gray Morphology
- Grid
- Grid/Collection Stitching Plugin
- HDF5 Vibez
- Helmholtz Analysis
- Help on Menu Item
- Hill Shade
- Hough Circle Transform
- IJ Blob
- IJ Robot
- IJMMD
- Image Annotation
- Image Expression Parser
- Image Stabilizer
- Image Stitching
- Image Synthesizer
- Image5D
- IMBalENce
- Importing Image Files
- Plugins
- Integral Image Filters
- Interaction Analysis
- Interaction Factor
- Interactive Affine
- Interactive Fitting
- Interactive Marker-controlled Watershed
- Interactive Moving Least Squares
- Interactive Perspective
- Interactive Rigid
- Interactive Similarity
- Interactive Stack Rotation
- Interactive Watershed
- Invasion assay
- IsletJ
- IsletJ2
- IsoData Classifier
- Iterative Deconvolve 3D
- JFilament
- Kalman Stack Filter
- Kappa
- Kuwahara Filter
- KymographBuilder › Yet Another Kymograph Fiji plugin
- KymoResliceWide
- Labkit
- Landmark Correspondences
- Lasso and Blow Tool
- Level Sets
- LimeSeg
- LinearDistance
- Linear Kuwahara
- Linear Stack Alignment with SIFT
- List all threads
- Local Thickness
- Low Light Tracking Tool
- LSM Worker
- LUMoS Spectral Unmixing
- LungJ
- M I P
- Make Fiji Package
- Make Screencast
- Malaria Sporozoites (9.2MB)
- Manual drift correction plugin
- Manual Tracking
- Marker-controlled Watershed
- Mask Of Nearby Points
- Max Inscribed Circles
- Maximum Entropy Threshold
- Microscope Focus Quality
- Microscope Measurement Tools
- Miji
- MiNA - Mitochondrial Network Analysis
- Minimum Cost Z surface Projection
- Minimum/Maximum/Median
- Mixture Modeling Thresholding
- MoBIE
- MorphoLibJ
- Morphological Segmentation
- MosaicJ
- MOSAICsuite
- Moving Least Squares
- MRI Perfusion
- MS-ECS-2D update site
- MSER parameters
- MTrack2
- MTrackJ
- Multi Kymograph
- Multi Otsu Threshold
- Multi Stack Montage
- Multi-View Deconvolution
- Multi-View Fusion
- Multifrac
- Multiple Image Processor
- MultiThresholder
- Multiview-Reconstruction
- MVR-DefineDataset
- MVR-FusionDeconvolution
- MVR-ResaveDataset
- MyofibrilJ
- N2V
- Name Landmarks and Register
- NanoTrackJ
- NeuronDetector
- NeuronJ
- Noise Generator
- NoiSee
- Non Local Means Denoise
- Nucleus Counter
- OMEVisual
- Op Finder
- OtoRing
- Panorama
- Parallel Iterative Deconvolution
- Parallel Spectral Deconvolution
- Particle Tracker
- ParticleSizer
- Pendent Drop
- PerfusionMRI
- PhotoBend
- PhotonImaging
- PillarTracker
- PillarTracker GUI
- PIV analyser
- PixFRET
- Point Analysis
- Point Picker
- PQCT
- Pub Montage
- Public data sets
- Quantile Based Normalization
- Quiver Plot
- Radial Symmetry
- RandomJ
- RATS: Robust Automatic Threshold Selection
- Read and Write Excel
- Reconstruct Reader
- Region Competition
- Register Virtual Stack Slices
- Replace Red with Magenta
- RETINA Analysis Toolkit
- Retinex
- RGB-Gray Merge
- RGB Measure Plus
- RGB Profiler
- RGB to Montage
- Ridge Detection
- Robust clump splitting
- ROI Conversions
- ROI Picker
- Rolling Ball Background Subtraction
- Saim
- Same Slice in Multiple Images
- SampEn2D
- Samples
- sciview
- Segment blob in 3D Viewer
- Segmentation Editor
- SEM FEI metadata scale
- SEM JOEL Scale
- Series Labeler
- ImageJ Server
- Shape Filter
- Shape Index Map
- Shape Smoothing
- Shepp-Logan Phantom
- Sholl Analysis
- Show Color Surfaces
- Sigma Filter
- SIMcheck
- Simulate Color Blindness
- SIOX: Simple Interactive Object Extraction
- Skeletonize3D
- Slice Labeler
- SlideJ
- SLIM Curve
- SME Projection
- Snakuscule
- Spheres and Tubes in 3D
- SPIM Bead Registration
- SPIM Bead Registration (deprecated)
- SPIM Opener
- SPIMage processing course
- Spirals
- Spline Deformation Generator
- Spot Intensity Analysis
- SpotCounter
- Spots colocalization (ComDet)
- SpotTracker
- Sprout Morphology
- Squassh
- Stack Manipulation
- StackObjectCombiner
- StackReg
- StarDist
- Statistical Region Merging
- StereoMate
- Stereoscopic 3D Projection
- Stitching 2D/3D
- Stitching data acquisition
- Stochastic Denoise
- Strahler Analysis
- Straighten...
- Surfaceness
- Sync Windows
- TAPAS
- TEM suite
- Temporal Median
- Test Block Matching Parameters
- Test Java3D
- Thread Killer
- Time Lapse
- Time Stamper
- ToAST
- TopoJ
- TraJClassifier
- TrakEM2 Archipelago
- Transform Virtual Stack Slices
- TransformJ
- TreeJ
- Tubeness
- TurboReg
- Tutorial Maker
- UnwarpJ
- Updater
- Upload Sample Image
- Vessel Analysis
- VHPro
- VIB Protocol
- Video Editing
- View5D
- VisBio Fiji plugin
- Void Whizzard
- Volume Calculator
- Volume Viewer
- Watershed Algorithm (ImageJ plugin)
- Wavelet Denoise
- Xlib
- ZedMate
- ZFBONE
/plugins
- 3D Filters
- 3D ImageJ Suite
- 3D Mathematical Morphology
/plugins/3d-imagej-suite
- 3D Viewer › 4D Viewer
- 3D Viewer › Apply Transformation
- 3D Viewer › Change Attributes
- 3D Viewer › Content Structure
- 3D Viewer › Custom Surface
- 3D Viewer › CustomBehavior
- 3D Viewer › Developer Documentation
- 3D Viewer › Display a Stack
- 3D Viewer › Example code
- 3D Viewer › Highlight Points
- 3D Viewer
- 3D Viewer › Isosurface
- 3D Viewer › Record a Movie
- 3D Viewer › Screencasts
- 3D Viewer › Surface Plot
- 3D Viewer › Volume Rendering
/plugins/3d-viewer
- Analyze Skeleton 2D time series
- AnalyzeSkeleton
- Skeleton analysis video tutorial
/plugins/analyze-skeleton
- BigDataViewer Example Datasets
- BigDataViewer
- BigDataViewer Playground
- Bigdataviewer Scijava
- BigDataServer
- BigDataServerDraft
/plugins/bdv
- BigStitcher Advanced stitching
- BigStitcher AutoLoader
- BigStitcher BDV
- BigStitcher BoundingBox
- BigStitcher BrightnessContrastAdjustment
- BigStitcher Deconvolution
- BigStitcher Define new dataset
- BigStitcher Flatfield correction
- BigStitcher FRC
- BigStitcher Fuse
- BigStitcher Global optimization
- BigStitcher Headless
- BigStitcher ICP refinement
- BigStitcher Image Splitting
- BigStitcher
- BigStitcher Interest point management
- BigStitcher Interest points
- BigStitcher manual translation
- BigStitcher MultiView Mode
- BigStitcher Open existing
- BigStitcher Pairwise shift
- BigStitcher Preview Pairwise shift
- BigStitcher PSF
- BigStitcher Registration
- BigStitcher ReorientSample
- BigStitcher Select illumination
- BigStitcher SpecialLoaders
- BigStitcher StackLoader
- BigStitcher Stitching Mode
/plugins/bigstitcher
- DHM Utilities
- DHM Utilities/Multi-Image Landmark Correspondences
- DHM Utilities/Phase Unwrapping
- DHM Utilities/Reconstruction
/plugins/dhm-utilities
- Example mamut.properties file
- Getting started with MaMuT
- MaMuT
/plugins/mamut
- Advanced mode(MTrack)
- Batch mode(MTrack)
- MicrotubuleTracker
- Microtubule polarity and (+) end vs. (-) end tracking
- Read more on microtubule polarity and (+) end vs. (-) end tracking
- Read more about MSER parameters
- Read more about Preprocessing
- Read more on RANSAC models
- Read more about the RANSAC parameters
- MSER as the segmentation method
- Preprocessing(MTrack)
- More explanation
- MTrack-Ransac fits
- MTrack-RANSAC models
- MTrack-RANSAC parameters
- Sub-pixel localization parameter selection
- Watershedding and Hough transform parameters
- Watershed followed by MSER
/plugins/mtrack
- Simple Neurite Tracer › 3D Interaction
- Simple Neurite Tracer › Basic Instructions
- Simple Neurite Tracer › "Export to SWC" Tutorial
- Simple Neurite Tracer › Preprocessing Data for Better Results
- Simple Neurite Tracer › Screencasts
- Simple Neurite Tracer › Selecting paths
- Simple Neurite Tracer › Sholl Analysis
- Simple Neurite Tracer › Step-By-Step Instructions
- Simple Neurite Tracer › Testing Procedure
- Simple Neurite Tracer › Using MIP Overlays
- Simple Neurite Tracer › Wishlist
/plugins/simple-neurite-tracer
- SNT › Analysis
- SNT › FAQ
- SNT
- SNT › Key Shortcuts
- SNT › Manual
- SNT › Modeling
- SNT › Reconstruction Viewer
- SNT › Screencasts
- SNT › Scripting
- SNT › Step-By-Step Instructions
- SNT › .traces File Format
- SNT › Tubular Geodesics
/plugins/snt
- SPIM Registration
- SPIM Registration Method
- SPIM Registration on cluster (deprecated)
/plugins/spim-registration
- How to write your own edge feature analyzer algorithm for TrackMate
- How to write your own particle-linking algorithm for TrackMate
- How to write your own spot feature analyzer algorithm for TrackMate
- How to write your own track feature analyzer algorithm for TrackMate
- How to write your own viewer for TrackMate
- TrackMate FAQ
- Find maxima (TrackMate module)
- Getting started with TrackMate
- Manual editing of tracks using TrackMate
- Manual tracking with TrackMate
- TrackMate Performance
- Scripting TrackMate
- TrackMate3 devel
- TrackScheme
- Using TrackMate from MATLAB
- TrackMate version history
/plugins/trackmate
- Trainable Segmentation Plugin Implementation
- Trainable Segmentation Plugin (deprecated)
/plugins/trainable-segmentation
- TrakEM2 add more sections/layers tutorial
- TrakEM2 align sections tutorial
- TrakEM2 basics tutorial
- TrakEM2
- TrakEM2 measurements tutorial
- TrakEM2 saving project tutorial
- TrakEM2 Scripting
- TrakEM2 segmentation modes tutorial
- TrakEM2 semi-automatic segmentation tutorial
- TrakEM2 TPlugIn
- TrakEM2 tutorials
/plugins/trakem2
- Trainable Weka Segmentation - How to compare classifiers
- Trainable Weka Segmentation - How to install new classifiers
- Trainable Weka Segmentation
- Minimum Splits and Mergers Warping error
- Rand error
- Scripting the Trainable Weka Segmentation
- Topology preserving warping error
/plugins/tws
- Script Editor Auto Import
- Scripting basics
- Batch Processing
- BeanShell Scripting
- Chess
- Clojure Scripting
- Scripting comparisons
- Groovy Scripting
- How to use the Javadoc
- Scripting
- Script Interpreter
- JavaScript Scripting
- JRuby Scripting
- Introduction into Macro Programming
- MATLAB Scripting
- Renjin Scripting
- Scala Scripting
- Using the Script Editor
- Script Templates
- Scripting toolbox
/scripting
- Jython Scripting Examples
- Jython Scripting
/scripting/jython
- Bio7
- BioDIP
- BioImageXD
- CellProfiler
- Endrov
- FunImageJ
- Icy
- ImageJ
- ImageJ1
- ImageJFX
- ImageJX
- ImagePy
- ImageSXM
- ITK
- JEX
- KNIME
- MBF Plugin Collection
- Micro-Manager
- NIH Image
- SciJava Jupyter Kernel
- Virtual Cell
- VisBio
/software
- Downloading and Building Fiji From Source
- Fiji Downloads
- Featured Fiji Projects
- Fiji
- Links
- Fiji/Publications
/software/fiji
- ImageJ2 development releases
- ImageJ2 grant proposal
- ImgLibProcessor
- ImageJ2 implementation notes
- ImageJ2
/software/imagej2
- Analyze FRAP movies with a Jython script
- How to apply a common operation to a complete directory
- How to call a plugin with a range of parameters
- Correcting drift in FRAP experiments
- Downsample
- Edit LUT As Text
- Gabor Filter script
- Generate and exploit Kymographs
- The Hue Game
- ImageJ2 Python Scripts
- Mamed
- Multithreaded Image Processing in Clojure
- Multithreaded Image Processing in JavaScript
- Plasma Cloud
- RGB to CMYK
- Segmentation evaluation after border thinning - Script
- Segmentation evaluation metrics - Script
- Image Processing School Pilsen 2009 - Segmentation
- Stitch and Align a sequence of grid images Tutorial
- Super Sloppy Surface Reconstruction
/tutorials
- Automatic Update Site Uploads
- How to upload to core update sites
- Update site FAQ
- Update Sites
- Update Site ›LOCI
- How to set up and populate an update site
/update-sites
- Neuroanatomy ›External Resources
- Neuroanatomy
