This page lists unreviewed pages on this wiki, which have not yet been compared to their counterparts from the old wiki to ensure they look as good or better than before. It was originally part of the “Great Wiki Launch” editing sprint of June 1-4, 2021, but the list remains useful for vetting pages that still have not been checked.
Pages on the site
As we review pages and mark them done, they will automatically disappear from the Pages remaining list, and advance the progress bar. Our goal is to review every page by the end of Friday, June 4! WE CAN DO IT! 💪
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- Finer Grained Debian Packages
- Debugging
- Debugging Exercises
- Developing ImageJ2 in Eclipse
- Gradle
- IDEs
- Unit tests for ImageJ
- How to contribute to an existing plugin or library
- Developing ImageJ2 in IntelliJ IDEA
- Javassist
- Kotlin
- Logging
- Using Maven with Eclipse
- MiniMaven
- Developing ImageJ2 in NetBeans
- Supported Compilers
- TensorFlow-GPU
- UpdaterV1
- UpdaterV2
- Using Weka
/develop
- 2008 Hackathon in Dresden
- 2011 Hackathon in Madison
- Image Processing School Pilsen 2009
- ISBI 2012
- Segmentation of neuronal structures in EM stacks challenge - ISBI 2012
/events
- GSoC 2011 Ideas
/events/gsoc-2011
- Particle Analysis
- Registration
- Segmentation
- Spatial Calibration
- Stack-slice Manipulations
- T-functions
- Thresholding
- Tracking
- Visualization
- Watershed Separation
- Z-functions
/imaging
- Java 3D
/libs
- Comparison of MATLAB functions and Ops
- ImageJ Ops
/libs/imagej-ops
- ImgLib1
- ImgLib1: Iterating through pixel data
- Using ImgLib1 in an ImageJ plugin
- Into ImgLib - Generic Image Processing in Java
/libs/imglib1
- ImgLib2 - Accessibles
- ImgLib2 Algorithms
- Changes from ImgLib1 to ImgLib2
- Developing ImgLib2
- ImgLib2 Documentation
- ImgLib2 FAQ
- Gauss package for ImgLib2
- LoopBuilder
- Creating Imglib2 images in MATLAB
- ImgLib2 - Advanced Programming Workshop
/libs/imglib2
- Bob Hanson
- Shang Jyun Lin
- Till Bretschneider
- Daniel E. Maidana
- Benjamin Wilhelm
- IMBMicroscopy
- James C. Sears
- Michal Karm Babacek
- Martin Čapek
- Lasse Wollatz
- Lee Kamentsky
- Juan Pablo
- Nathan Hotaling
- Gavin Minty
- Nicholas Condon
- Pablo Vicente-Munuera
- Pedro Gomez-Galvez
- Rainer Heintzmann
- Stephan Janosch
- Julien Cochennec
- Weisong Zhao
- Yaman al-Yousof
- Antonio Carlos da Silva Senra Filho
- Astha Jaiswal
- Alessandro Felder
- Alexander Krull
- Alexandre Bastien
- Andrew McCall
- Stanislav Chizhik
- Audrey Karperien
- Piotr Baniukiewicz
- Benjamin Schmid
- Benoit Lombardot
- Birgit Möller
- BioVoxxel
- Beat Münch
- Benjamin Nanes
- Brian Northan
- Daniel James White
- Cyril TURIÈS
- Damien Ramunno-Johnson
- Daniel Sage
- David Colameo
- Demis D. John
- Eugene Katrukha
- Erik Meijering
- Deborah Schmidt
- Helder C. R. de Oliveira
- HongKee Moon
- Ignacio Arganda-Carreras
- Irving Hernández
- Ilan Tal
- Wilhelm Burger
- Jim Schaff
- Gregory Jefferis
- Jiri Janacek
- Joost Willemse
- Kyle Harrington
- Karl-Heinz Kunzelmann
- Kouichi C. Nakamura
- Olivier Burri
- Gabriel Landini
- Alan Brooks
- Larry Lindsey
- Leonard Dobens
- Lennart Hilbert
- Benjamin Smith
- Luis Escudero
- Jan Martens
- Matthias Arzt
- Michael Doube
- Melissa Linkert
- Michael Majurski
- Jerome Mutterer
- Marwan Zouinkhi
- Nick Perry
- Nico Stuurman
- Cronin Seynnes
- Norbert Vischer
- Yu Liu
- George Patterson
- Richard Domander
- Xiaochun Xu
- Shaohe Wang
- Sean Parsons
- Steven J. West
- Ian Sweeney
- Vitor Vaz da Silva
- Matt McCormick
- Thorsten Wagner
- Jean-Yves Tinevez
- Gabriella Turek
- Victor Caldas
- Verena Kaynig-Fittkau
- T. Vuillaume
- Martin Ovesný
/people
- 2D Histogram
- 3D Binary Filters
- 3D Blob Segmentation
- 3D cyclorama
- 3D Objects Counter
- 3D Segmentation
- 3Dscript
- 3View import list
- ActogramJ
- Adaptive Median Filter
- Adelson's Squares
- Adiposoft
- Anaglyph for Red Cyan glasses
- Analyze Stripes
- Anisotropic Diffusion 2D
- AplimTools
- Archipelago Plugins
- Atlas Toolkit
- Auto Local Threshold
- Auto Threshold
- Automatic detection of neuronal labeling in histological image series
- Automatic optimal filament segmentation
- Average Images
- Background Subtractor
- BAR
- BigDataProcessor
- BigDataProcessor2
- Biomat
- BioVoxxel Toolbox
- Bleach Correction
- Blend two images
- Blind Analysis Tools
- Block Matching
- BoneJ1
- CElegansBeadsAnalysis plugin
- Calc dSpace
- Calculator Plus
- CAMDU
- CARE
- CATS
- Cell Counter
- Cell detector
- Celsius to fahrenheit
- Classic Watershed
- ClearVolume
- CLIJ
- Cluster Analysis
- Colocalization Image Creator
- Colocalization Object Counter
- Colocalization Test
- Colocalization Threshold
- Colocalize
- Color Histogram
- Color Inspector 3D
- Colour Deconvolution
- Colour merge
- Compute Curvatures
- Contour Lines
- Correct 3D Drift
- CPU Meter
- Crop (3D)
- Cross Sectional Analyzer
- CSBDeep
- CSIMLab
- DeepClas4Bio
- DeformationTracker
- Deforming Mesh 3D
- Delayed Snapshot
- Descriptor based registration
- Descriptor-based registration (2d/3d)
- Detrendr
- DiameterJ
- Dichromacy
- Diffraction PSF 3D
- Directionality
- Distance Analysis
- Distance Transform 3D
- Distance Transform Watershed
- Dithering
- Dynamic Kymograph
- Dynamic Reslice
- Edge and symmetry filter
- Elastic Alignment and Montage
- Elastix
- Ellipse split
- EpiGraph
- FAST
- FeatureJ
- Fiji Developer
- Fiji Logo 3D
- Fiji Plugins
- FijiArchipelago
- FijiRelax
- Fijiyama
- Find Connected Regions
- Find Dimension of Raw Image
- Find Peaks
- FITS Analysis
- FlowJ
- Fourier Ring Correlation Plugin
- Fpbioimage
- Frames
- FS Align TrakEM2
- Fuzzy Set Intensity Transformations
- Gabriel Graph
- GDSC-SMLM2
- Get dSpace
- Get Meta
- Granulometric Filtering
- Graph Cut
- Gray Morphology
- Grid
- Helmholtz Analysis
- Help on Menu Item
- Hough Circle Transform
- IJ Blob
- IJ Robot
- IJMMD
- Image Annotation
- Image Expression Parser
- Image Synthesizer
- Image5D
- Importing Image Files
- Plugins
- Interaction Analysis
- Interaction Factor
- Interactive Affine
- Interactive Fitting
- Interactive Marker-controlled Watershed
- Interactive Rigid
- Interactive Similarity
- Interactive Watershed
- Invasion assay
- IsletJ
- IsletJ2
- IsoData Classifier
- Iterative Deconvolve 3D
- JFilament
- Kalman Stack Filter
- Kuwahara Filter
- KymographBuilder › Yet Another Kymograph Fiji plugin
- Lasso and Blow Tool
- Level Sets
- LinearDistance
- Linear Kuwahara
- List all threads
- Local Thickness
- Low Light Tracking Tool
- LSM Worker
- LUMoS Spectral Unmixing
- LungJ
- M I P
- Make Fiji Package
- Make Screencast
- Malaria Sporozoites (9.2MB)
- Manual drift correction plugin
- Manual Tracking
- Marker-controlled Watershed
- Mask Of Nearby Points
- Max Inscribed Circles
- Maximum Entropy Threshold
- Microscope Measurement Tools
- Miji
- MiNA - Mitochondrial Network Analysis
- Minimum Cost Z surface Projection
- Minimum/Maximum/Median
- Mixture Modeling Thresholding
- MoBIE
- MorphoLibJ
- Morphological Segmentation
- MOSAICsuite
- Moving Least Squares
- MS-ECS-2D update site
- MSER parameters
- MTrack2
- MTrackJ
- Multi Kymograph
- Multi Otsu Threshold
- Multi Stack Montage
- Multi-View Fusion
- Multifrac
- Multiple Image Processor
- MultiThresholder
- Multiview-Reconstruction
- MVR-FusionDeconvolution
- MVR-ResaveDataset
- MyofibrilJ
- N2V
- Name Landmarks and Register
- NanoTrackJ
- NeuronDetector
- Noise Generator
- NoiSee
- Nucleus Counter
- OMEVisual
- Op Finder
- OtoRing
- Panorama
- Parallel Iterative Deconvolution
- Parallel Spectral Deconvolution
- Particle Tracker
- ParticleSizer
- Pendent Drop
- PerfusionMRI
- PhotoBend
- PhotonImaging
- PillarTracker
- PillarTracker GUI
- PIV analyser
- PixFRET
- Point Analysis
- PQCT
- Puncta Process
- Pub Montage
- Public data sets
- Quantile Based Normalization
- Quiver Plot
- Radial Symmetry
- RandomJ
- RATS: Robust Automatic Threshold Selection
- Read and Write Excel
- Reconstruct Reader
- Region Competition
- Register Virtual Stack Slices
- Replace Red with Magenta
- RETINA Analysis Toolkit
- Retinex
- RGB-Gray Merge
- RGB Measure Plus
- RGB Profiler
- RGB to Montage
- Ridge Detection
- Robust clump splitting
- ROI Conversions
- ROI Picker
- Rolling Ball Background Subtraction
- Saim
- Same Slice in Multiple Images
- SampEn2D
- Samples
- Segment blob in 3D Viewer
- Segmentation Editor
- SEM FEI metadata scale
- SEM JOEL Scale
- Series Labeler
- ImageJ Server
- Shape Filter
- Shape Index Map
- Shape Smoothing
- Show Color Surfaces
- Sigma Filter
- SIMcheck
- SIOX: Simple Interactive Object Extraction
- Slice Labeler
- SlideJ
- SME Projection
- Spatial Pathology Plugin
- Spheres and Tubes in 3D
- SPIM Bead Registration
- SPIM Bead Registration (deprecated)
- SPIM Opener
- SPIMage processing course
- Spirals
- Spline Deformation Generator
- Spot Intensity Analysis
- SpotCounter
- Spots colocalization (ComDet)
- SpotTracker
- Sprout Morphology
- Squassh
- Stack Manipulation
- StackObjectCombiner
- StarDist
- Statistical Region Merging
- StereoMate
- Stereoscopic 3D Projection
- Stitching data acquisition
- Straighten...
- Surfaceness
- TAPAS
- TEM suite
- Temporal Median
- Test Block Matching Parameters
- Test Java3D
- Thread Killer
- Time Lapse
- Time Stamper
- ToAST
- TopoJ
- TraJClassifier
- TrakEM2 Archipelago
- Transform Virtual Stack Slices
- TransformJ
- TreeJ
- Tutorial Maker
- Updater
- Upload Sample Image
- Vessel Analysis
- VHPro
- Video Editing
- Void Whizzard
- Volume Calculator
- Volume Viewer
- Watershed Algorithm (ImageJ plugin)
- Wavelet Denoise
- ZedMate
- ZFBONE
/plugins
- 3D Filters
- 3D Mathematical Morphology
/plugins/3d-imagej-suite
- 3D Viewer › 4D Viewer
- 3D Viewer › Apply Transformation
- 3D Viewer › Change Attributes
- 3D Viewer › Content Structure
- 3D Viewer › Custom Surface
- 3D Viewer › CustomBehavior
- 3D Viewer › Developer Documentation
- 3D Viewer › Display a Stack
- 3D Viewer › Example code
- 3D Viewer › Highlight Points
- 3D Viewer
- 3D Viewer › Isosurface
- 3D Viewer › Record a Movie
- 3D Viewer › Screencasts
- 3D Viewer › Surface Plot
- 3D Viewer › Volume Rendering
/plugins/3d-viewer
- Analyze Skeleton 2D time series
- AnalyzeSkeleton
- Skeleton analysis video tutorial
/plugins/analyze-skeleton
- BigDataViewer Example Datasets
- BigDataViewer
/plugins/bdv
- BigStitcher › Advanced Stitching
- BigStitcher › AutoLoader
- BigStitcher › BigDataViewer
- BigStitcher › Bounding Box
- BigStitcher › Brightness/Contrast Adjustment
- BigStitcher › Deconvolution
- BigStitcher › Define New Dataset
- BigStitcher › Flatfield Correction
- BigStitcher › Fourier Ring Correlation
- BigStitcher › Image Fusion
- BigStitcher › Global Optimization
- BigStitcher › Headless
- BigStitcher › Iterative Closest Point Refinement
- BigStitcher › Image Splitting
- BigStitcher
- BigStitcher › Interest Point Management
- BigStitcher › Interest Points
- BigStitcher › Manual Translation
- BigStitcher › MultiView Mode
- BigStitcher › Open Existing
- BigStitcher › Pairwise Shift
- BigStitcher › Preview Pairwise Shift
- BigStitcher › Point Spread Functions
- BigStitcher › Registration
- BigStitcher › Reorient Sample
- BigStitcher › Select Illumination
- BigStitcher › Special Dataset Importers
- BigStitcher › Stack-based Dataset Import
- BigStitcher › Stitching Mode
/plugins/bigstitcher
- bUnwarpJ
/plugins/bunwarpj
- DHM Utilities
- DHM Utilities › Multi-Image Landmark Correspondences
- DHM Utilities › Phase Unwrapping
- DHM Utilities › Reconstruction
/plugins/dhm-utilities
- Advanced mode(MTrack)
- Batch mode(MTrack)
- Microtubule polarity and (+) end vs. (-) end tracking
- Read more on microtubule polarity and (+) end vs. (-) end tracking
- Read more about MSER parameters
- Read more about Preprocessing
- Read more on RANSAC models
- Read more about the RANSAC parameters
- MSER as the segmentation method
- Preprocessing(MTrack)
- More explanation
- MTrack-Ransac fits
- MTrack-RANSAC models
- MTrack-RANSAC parameters
- Sub-pixel localization parameter selection
- Watershedding and Hough transform parameters
- Watershed followed by MSER
/plugins/mtrack
- SPIM Registration
- SPIM Registration Method
/plugins/spim-registration
- TrackMate Performance
/plugins/trackmate/detectors
- Find maxima (TrackMate module)
/plugins/trackmate/extensions
- TrackMate version history
/plugins/trackmate/misc
- Getting started with TrackMate
/plugins/trackmate/tutorials
- Trainable Segmentation Plugin Implementation
- Trainable Segmentation Plugin (deprecated)
/plugins/trainable-segmentation
- TrakEM2 add more sections/layers tutorial
- TrakEM2 align sections tutorial
- TrakEM2 basics tutorial
- TrakEM2
- TrakEM2 measurements tutorial
- TrakEM2 saving project tutorial
- TrakEM2 Scripting
- TrakEM2 segmentation modes tutorial
- TrakEM2 semi-automatic segmentation tutorial
- TrakEM2 TPlugIn
- TrakEM2 tutorials
/plugins/trakem2
- Trainable Weka Segmentation - How to compare classifiers
- Trainable Weka Segmentation - How to install new classifiers
- Trainable Weka Segmentation
- Minimum Splits and Mergers Warping error
- Rand error
- Scripting the Trainable Weka Segmentation
- Topology preserving warping error
/plugins/tws
- Xlib
/plugins/xlib
- Script Editor Auto Import
- Scripting basics
- Batch Processing
- BeanShell Scripting
- Clojure Scripting
- Scripting comparisons
- Scripting
/scripting
- Jython Scripting Examples
- Jython Scripting
/scripting/jython
- Downloading and Building Fiji From Source
- Featured Fiji Projects
- Links
- Fiji Publications
/software/fiji
- ImageJ2 grant proposal
- ImgLibProcessor
- ImageJ2 implementation notes
/software/imagej2
- Analyze FRAP movies with a Jython script
- How to apply a common operation to a complete directory
- How to call a plugin with a range of parameters
- Correcting drift in FRAP experiments
- Edit LUT As Text
- Gabor Filter script
- Generate and exploit Kymographs
- The Hue Game
- ImageJ2 Python Scripts
- Mamed
- Multithreaded Image Processing in Clojure
- Multithreaded Image Processing in JavaScript
- Plasma Cloud
- RGB to CMYK
- Segmentation evaluation after border thinning - Script
- Segmentation evaluation metrics - Script
- Image Processing School Pilsen 2009 - Segmentation
- Stitch and Align a sequence of grid images Tutorial
- Super Sloppy Surface Reconstruction
