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Automatic optimal filament segmentation

Name

Filament Segmentation

Software

ImageJ

Author

MOSAIC Group , Center for Systems Biology Dresden (CSBD) , Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG) , Dresden, Germany.

Maintainer

Krzysztof.Gonciarz

Source

MPI-CBG git

Status

active

Category

Segmentation


Filament Segmentation can be used for a globally optimal filament segmentation of 2D images with previously unknown number of filaments. Presented solution can produce sub-pixel accuracy results and handle different types of image data from different microscopy modalities.

The best way to install it is via the MOSAIC Fiji Update site, as described on the MOSAIC web page.

The algorithm is described in X. Xiao, V. F. Geyer, H. Bowne-Anderson, J. Howard, and I. F. Sbalzarini (2016[1]).

References

[1] X. Xiao, V. F. Geyer, H. Bowne-Anderson, J. Howard, and I. F. Sbalzarini. Automatic optimal filament segmentation with sub-pixel accuracy using generalized linear models and B-spline level-sets. Med. Image Anal., 32:157–172, 2016