Tutorials for new users
The following tutorials are highly recommended for new users:
1. | Getting started | An introduction to the ImageJ and ImageJ2 applications |
2. | Image Analysis Principles | Must-read guidelines for effective acquisition and analysis of images |
3. | Living Workshops | Workshops for ImageJ/Fiji at introductory, intermediate and advanced levels |
4. | Scripting | Become a power user by writing scripts! |
Tutorials for image processing techniques
The Scientific Imaging Tutorials introduce common elements of image processing.
Tutorials provided by microscopy facilities
Many valuable resources for science are provided by facilities which collect, retain and maintain knowledge that might otherwise be lost. Here is a list of links to facilities providing tutorials and documentation:
Please feel welcome to add your organization’s tutorials to this list!
Tutorials for software developers and scripters
Start with the ImageJ2 tutorial notebooks!
And be sure to read over the Development pages.
Tutorials on this site
- Analyze FRAP movies with a Jython script
- How to apply a common operation to a complete directory
- How to call a plugin with a range of parameters
- Chess
- Correcting drift in FRAP experiments
- Downsample
- Edit LUT As Text
- Gabor Filter script
- Generate and exploit Kymographs
- The Hue Game
- ImageJ2 Python Scripts
- Linux command line tutorial
- Mamed
- Multithreaded Image Processing in Clojure
- Multithreaded Image Processing in JavaScript
- Jupyter Notebooks
- Open an image
- A Tutorial for using OpenCL in ImageJ
- Plasma Cloud
- RGB to CMYK
- Segmentation evaluation after border thinning - Script
- Segmentation evaluation metrics - Script
- Image Processing School Pilsen 2009 - Segmentation
- Stitch and Align a sequence of grid images Tutorial
- Super Sloppy Surface Reconstruction
To add your tutorial to this list, place the page in the /tutorials
folder.
See also
- Presentations about ImageJ and friends
- Fiji YouTube channel
- ImageJ videos and Fiji videos on YouTube
- Lecture BioImage Analysis 2020 videos on YouTube by Robert Haase