ImageJ is an open source image processing program for multidimensional image data with a focus on scientific imaging.
Fiji Is Just ImageJ—a “batteries-included” distribution of ImageJ which includes many useful plugins contributed by the community.
|Image processing, colocalization, deconvolution, registration, segmentation, tracking, visualization and much more.|
|A powerful mechanism for extending ImageJ in all kinds of useful ways.|
|Automated, reproducible workflows via scripts and macros, including headless on a remote server or cluster.|
|A vibrant, diverse, and helpful user community that gives rise to insightful scientific exchanges.|
ImageJ’s extensibility is the root of its effectiveness: many advanced image-processing methods are not provided by the core application, but rather are plugins written by specialists in specific fields, made available via update sites.
- Get ImageJ from the Downloads page.
- Read the Getting started tutorial.
- Then peruse the User Guides, additional tutorials, and presentations.