# CARE

## Install

### ImageJ update site

The CSBDeep plugin can be installed from the ImageJ update site 1. See the CSBDeep Wiki Pages for more details.

### From source

1. Clone this repository.
2. Run the following command from inside the repo:

mvn -Dimagej.app.directory=/path/to/Fiji.app/ -Ddelete.other.versions=true

## Run demos

2. Open Fiji.
3. Open an example image, e.g. tribolium.tif.
4. Run the plugin via Plugins > CSBDeep > Demo.
5. Run the plugin by pressing Ok.

If all goes well, an image will be displayed representing the result of the model execution.

See the CSBDeep Wiki Pages for more details.

1. Use the python code to train your network with your data. Export it as ZIP.
2. Open Fiji.
3. Open an image.
4. Run the plugin for any network via Plugins > CSBDeep > Run your network.
5. Load your exported network by pressing Browse on the Import model (.zip) line.
6. Run the plugin by pressing Ok.

If all goes well, an image will be displayed representing the result of the model execution.

See the CSBDeep Wiki Page for more details.