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This plugin takes in an image of muscle fibers, outlines and numbers all of the fibers, and outputs a table of each fiber’s area as well as an RGB Color image of the numbered fiber outlines on a black background.
Installation
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Download Cross-sectional-analysis.zip, unzip it and locate
Cross_Sectional_Analyzer.jar. -
Open the package contents of ImageJ, and navigate to
ImageJ/plugins/Filters. -
Put
Cross_Sectional_Analyzer.jarinside theImageJ/plugins/Filtersfolder, and restart imageJ. -
Once ImageJ opens, open an image to analyze, and calibrate the image. To run the plugin, use Plugins › Filters › Cross Sectional Analyzer.
