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Featured Fiji Projects

Fiji is home to quite a few nice ImageJ plugins! Here is a non-exhaustive list:

3D Viewer

  • Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.

Transform

Image registration

Segmentation

Tracking

Analysis

  • Skeletons and tree analysis

ImgLib2

  • Generic and extensible n-dimensional image processing library for Java.

TrakEM2

  • Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.

The core of Fiji.