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SPIMage processing course

Practical course on SPIM image processing

Hardware requirements

The overview of hardware requirements for SPIMage processing can be found here.

Standalone

Cluster

Software requirements

Sample data

OpenSPIM

Lightsheet Z1

Course outline

Installation

Pre-processing

Multi-view registration - single time-point

Multi-view fusion - single time-point

Time lapse registration

Time lapse fusion

Big Data Viewer

3d rendering