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Practical course on SPIM image processing
Hardware requirements
The overview of hardware requirements for SPIMage processing can be found here.
Standalone
Cluster
Software requirements
Sample data
OpenSPIM
Lightsheet Z1
Useful links
Course outline
Installation
Pre-processing
Multi-view registration - single time-point
Multi-view fusion - single time-point
Time lapse registration
Time lapse fusion
Big Data Viewer
3d rendering
