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CellProfiler

Plugin

Name

CellProfiler

Software

CellProfiler

Author

Broad Institute of MIT and Harvard

Maintainer

Broad Institute of MIT and Harvard

Source

on GitHub

Status

active


CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

Publications

Carpenter, A. E.; Jones, T. R. & Lamprecht, M. R. et al. (2006 Oct 31), “CellProfiler: image analysis software for identifying and quantifying cell phenotypes”, Genome Biology 7(10): R100, PMID 17076895, doi: (on Google Scholar).

Kamentsky, L.; Jones, T. R. & Fraser, A. et al. (2011 Feb 23), “Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software”, Bioinformatics 27(8): 1179-1180, PMID 21349861, doi: (on Google Scholar).

McQuin, C.; Goodman, A. & Chernyshev, V. et al. (2018 Jul 3), “CellProfiler 3.0: Next-generation image processing for biology”, PLOS Biology 16(7): e2005970, PMID 29969450, doi: (on Google Scholar).