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Temporal-Color Code

![ 256px | Stack of Listeria Movement ](/media/K listeria animated.gif “fig: 256px Stack of Listeria Movement “) ![ 256px | Temporal-Color Coded](/media/K temporal color coded listeria.png “fig: 256px Temporal-Color Coded”)


Temporal-Color Code




Kota Miura , Johannes Schindelin


Kota Miura (1)


on GitHub



Temporal-Color Code

Generates a temporal-color coded XY 2D image (above right) from HyperStack (above left). Works with both 2D time series and 3D time series.

Be sure to set the dimensional sizes (especially Z and T) properly with Image/Properties.

Work Flow

With a hyperstack window activated (at the most front among other images), select Image/Hyperstacks/Temporal-Color Code.

In dialog window, select a LUT from drop down menu. Selected LUT will be used for color coding the time. You could also set the range of frames to be coded. Default is full frames. There is also an option check-box for generating color-scale bar in separate window. This will show correspondence between color and frame number in the color coded image.