The Tubular Geodesics plugins were developed several years ago[1] for Simple Neurite Tracer but remain functional in modern SNT. They can be installed manually as an SNT add-on. Once installed, they allow you to trace on a filtered-version of your image in which neuronal processes (or other tubular structures) are significantly enhanced using ITK segmentation. More details on the following pages:
- Tubular Geodesics homepage
- Tracing on Filtered Images
- Secondary Image Screencast
- Generating Filtered Images
References
[1]
[2] Türetken E, Benmansour F, Fua P. Automated Reconstruction of Tree Structures using Path Classifiers and Mixed Integer Programming. IEEE Conference on Computer Vision and Pattern Recognition, Providence, Rhode Island, 2012.