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Example mamut.properties file

The key-bindings used in the MaMuT viewer can be customized through a text file, that allow you to remap any command to any key. To so, create a text file named mamut.properties in the Fiji.app folder (where the plugins and jars folders are). This file must follow this syntax example:

A=add spot
ENTER=add spot
D=delete spot
E=increase spot radius
Q=decrease spot radius
shift\ E=increase spot radius a lot
shift\ Q=decrease spot radius a lot
control\ E=increase spot radius a bit
control\ Q=decrease spot radius a bit
...

It follows the syntax key=command, one per line. Modifier keys such as press\|Control and press\|Shift are specified by prepending the key with their name, separated by a space escaped with a backslash \. Spaces in commands do not need to be escaped. The dash # character at the beginning of a line is used to insert comments.

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<source lang=”properties>

  1. The key bindings for MaMuT viewer windows.
  2. Available actions are the following (space in between words must be included):
  3. add spot
  4. delete spot
  5. increase spot radius
  6. increase spot radius a lot
  7. increase spot radius a bit
  8. decrease spot radius
  9. decrease spot radius a lot
  10. decrease spot radius a bit 12.
  11. semi-auto tracking
  12. toggle linking mode 15.
  13. show help
  14. toggle brightness dialog
  15. toggle interpolation
  16. toggle fused mode
  17. toggle grouping 21.
  18. toggle source visibility 0
  19. toggle source visibility 1
  20. toggle source visibility … up to 9 25.
  21. align XY plane
  22. align ZY plane
  23. align XZ plane 29.
  24. next timepoint
  25. previous timepoint
  26. step time forward
  27. step time backward 34.
  28. No space around ‘=’!
  29. An action can have several key bindings.
  30. When using shift, control, etc… use a a backslash-space after the modifier
  31. (as in ‘control\ Q’).

A=add spot ENTER=add spot D=delete spot E=increase spot radius Q=decrease spot radius shift\ E=increase spot radius a lot shift\ Q=decrease spot radius a lot control\ E=increase spot radius a bit control\ Q=decrease spot radius a bit shift\ A=semi-auto tracking shift\ L=toggle linking mode L=toggle link F1=help

S=brightness settings F6=visibility and grouping I=toggle interpolation F=toggle fused mode G=toggle grouping T=toggle manual transformation

F8=record max projection movie F10=record movie

shift\ 1=toggle source visibility 0 shift\ 2=toggle source visibility 1 shift\ 3=toggle source visibility 2 shift\ 4=toggle source visibility 3 shift\ 5=toggle source visibility 4 shift\ 6=toggle source visibility 5 shift\ 7=toggle source visibility 6 shift\ 8=toggle source visibility 7 shift\ 9=toggle source visibility 8 shift\ 0=toggle source visibility 9

shift\ Z=align XY plane shift\ X=align ZY plane shift\ Y=align XZ plane shift\ C=align XZ plane

CLOSE_BRACKET=step time forward M=next timepoint OPEN_BRACKET=step time backward N=previous timepoint

shift\ CLOSE_BRACKET=step time forward shift\ M=next timepoint shift\ OPEN_BRACKET=step time backward shift\ N=previous timepoint

shift\ B=set bookmark B=go to bookmark O=go to bookmark rotation

</source>