Labkit - Manual Segmentation - Quick Start Tutorial

This quick start tutorial shows you how to manually segment an image using the Labkit plugin for Fiji.

(For installation instructions and more tutorials click here)

Start Fiji, open your image, start Labkit (Plugins > Labkit > Open Current Image With Labkit)
Select + Add label
Use the Draw button (pencil icon) to mark the contour around any one object instance
Use the Flood Fill button (bucket icon) to fill inside this contour
When all objects have been labeled in the manner above, select Labeling > Save Labeling