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ImageJ Docs
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Learn
ImageJ Basics
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Supported Platforms
Windows
MacOS
Linux
Raspberry Pi
Android
File Formats
Bio-Formats
Video formats
QuickTime
TIFF
PDF
DICOM
Zeiss LSM
Olympus VSI
Opera Flex
FIB-SEM
Scientific Imaging
Principles of Scientific Imaging
Annotating Images
Colocalization
Color Image Processing
Deconvolution
Image Intensity Processing
Particle Analysis
Registration
Segmentation
Stack-slice Manipulations
T-functions
Tracking
Visualization
Z-functions
Extend
List of Extensions
Update Sites
List of Update Sites
Following an Update Site
Creating an Update Site
Terms of Service
Automatic Upload
Uploading to Core Sites
Update Sites FAQ
Statistics
Scripting
Scripting Basics
Script Editor
Parameters
User Input
Auto Import
Templates
Batch Processing
Running Headlessly
Scripting Comparisons
Toolbox
Languages
BeanShell Scripting
Groovy Scripting
ImageJ Macro
JavaScript
Lisp (Clojure)
MATLAB
Python (Jython)
Python (native)
R (Renjin)
Ruby (JRuby)
Scala Scripting
Development
Philosophy
Architecture
Source code
Project management
Coding style
Using Javadoc
Debugging
Wish list
Tools
GitHub
Maven
CI/CD
Dotfiles
IDEs
Eclipse
NetBeans
IntelliJ IDEA
Command Line
Guides
Writing plugins
Contributing to a plugin
Development lifecycle
Building a POM
Hands-on debugging
Adding new ops
Adding new formats
Using native libraries
Tips for developers
Tips for C++ developers
ImageJ 1.x plugins
Versioning
Logging
Uber-JARs
Git
Git in Eclipse (EGit)
Git mini howto
Git workshop
Git conflicts
Git topic branches
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Git reflogs
Git submodules
How to pinpoint regressions
How to publish a git repository
How to extract a subproject
Contribute
Citing
Contributors
Organizations
Governance
Funding
Contributing to Fiji
Licensing
Open Source
Apache
BSD
EPL
GPL
LGPL
MIT
Public domain
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Proprietary
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Headers
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Linking
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Symbols
Tables
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Discuss
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Chat
Explore
News
Events
Presentations
Conferences
Hackathons
More...
Libraries
ImageJ Ops
ImageJ Common
ImageJ Legacy
SciJava
SCIFIO
ImgLib2
Getting Started
Accessors
Accessibles
Examples
Introductory Workshop
Advanced Workshop
ImgLib2 images in MATLAB
Benchmarks
FAQ
Developing ImgLib2
ImgLib2 Discussion
More...
Software
NIH Image
ImageJ
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Fiji
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