ImageJ

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Topics Introduction Getting Started User Guides Tutorials Tips and Tricks Presentations Plugins
Techniques All Techniques Colocalization Deconvolution Registration Segmentation Stitching Tracking Visualization
Scripting Overview User input Basics of script writing How to use the Javadoc Batch processing Script Editor Auto Imports Templates Running headlessly Comparisons Toolbox Multithreading in Clojure Multithreading in JavaScript Chess in Jython
Languages BeanShell Groovy ImageJ Macro JavaScript Lisp (Clojure) MATLAB Python (Jython) R (Renjin) Ruby (JRuby) Scala

A thin wrapper around Renjin is currently available on the Java 8 update site, providing R-styled scripting in ImageJ.

See also scripting-renjin on GitHub.