Ticket #489 (closed enhancement: fixed)
Opened 2011-05-03T14:22:47-05:00
Last modified 2011-06-16T12:32:05-05:00
Add/Delete "Slice" in ImageJ2
| Reported by: | gharris | Owned by: | bdezonia |
|---|---|---|---|
| Priority: | major | Milestone: |
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| Component: | Data Model | Version: | |
| Severity: | major | Keywords: | |
| Cc: | Blocked By: | ||
| Blocking: |
Description
Decide what a "slice" is and how to designate how to apply an add or delete operation sensibly.
Change History
comment:2 Changed 2011-05-09T17:04:40-05:00 by bdezonia
Note that in the legacy layer we are supporting what IJ1 does. Thus if you have a 2x3x4 CZT stack of XY planes and you call a plugin that deletes a slice you get back a 1x23x1 CZT image of XY planes.
comment:3 Changed 2011-05-10T11:22:03-05:00 by bdezonia
Last comment not entirely accurate. Delete slice is sort of working now. IJ2 takes a 4x15 CZ stack and when deleting a slice turns it into a 4x14 stack (thus deleting 4 planes). This is likely just by accident.
Add slice is not working right now.
Probably best if we define our own plugins to replace a number of them in Image::Stacks menu (such as add slice, delete slice, next slice, prev slice, set slice).
comment:4 Changed 2011-05-10T11:27:51-05:00 by bdezonia
Add slice sort of works at the moment:
- add slice to T1 Head (3D) -> new slice added at position 2 of stack
- add slice to Organ of Corti (4D) any number of times 0> no changes
comment:5 Changed 2011-06-10T12:16:04-05:00 by bdezonia
- Milestone changed from imagej-2.0-beta2 to biweekly-2011: Jun-06 to Jun-17
Wrote pure IJ2 Add Data and Delete Data plugins
comment:6 Changed 2011-06-10T15:10:31-05:00 by bdezonia
Wrote pure IJ2 Add Axis and Delete Axis plugins
comment:7 Changed 2011-06-10T17:01:57-05:00 by bdezonia
Wrote pure IJ2 Reorder Axes plugin. Needs testing. Some TODOs listed in ReorderAxes.java
Some things that could be done to completely replace IJ1's functionality:
- setPosition (needs to be multidimensional and updates slider positions of UI)
- next slice and previous slice (needs to cycle thru current dimension and wrap other dims at boundaries) Maybe we need to specify the current dim to cycle within.
comment:8 Changed 2011-06-16T12:32:05-05:00 by bdezonia
- Status changed from new to closed
- Resolution set to fixed
Implemented all plugins to replace add slice, delete slice, next slice, prev slice, and set slice. Finished with c7876a41c96570e82a483472b737f7ca71680d4b and 581bfaabb4c1c38a332707ca94deaa3d4a155e8f.