Ticket #26 (closed task: duplicate)
Opened 2010-02-19T11:18:26-06:00
Last modified 2010-10-08T11:33:01-05:00
Improve Bio-Formats ITK plugin implementation
| Reported by: | curtis | Owned by: | hinerm |
|---|---|---|---|
| Priority: | major | Milestone: |
|
| Component: | FARSIGHT | Version: | |
| Severity: | non-issue | Keywords: | |
| Cc: | Blocked By: | ||
| Blocking: |
Description
To facilitate using Bio-Formats from within FARSIGHT, we have created a Bio-Formats ITK ImageIO plugin.
The current implementation is functional; however, there are several problems and limitations:
- Support for writing images not yet implemented.
- Hard-coded 5-dimensional image structure, regardless of actual image dimensionality.
- No population of physical pixel sizes, due to invalid memory access errors on some systems (e.g., OS X 10.5) when such code is enabled.
- More testing needed with multichannel data (and multichannel data does not work in FARSIGHT, due to limitations in the FARSIGHT codeebase).
- More testing needed on Windows systems.
It may make sense to break these tasks into separate tickets over time, as needed.
Change History
comment:1 Changed 2010-09-17T17:20:40-05:00 by curtis
- Owner changed from bselinsky to hiner
- Status changed from new to assigned
- Milestone changed from progress-report to biweekly-2010: Sep-20 to Oct-01