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Ticket #1650 (new defect)

Opened 2013-02-07T12:38:15-06:00

Last modified 2013-03-20T11:34:51-05:00

Port Gabriel Landini's threshold plugins

Reported by: bdezonia Owned by: bdezonia
Priority: major Milestone: imagej2-unscheduled
Component: Plugins Version:
Severity: serious Keywords:
Cc: Blocked By:
Blocking: #1632


We would like to bring Fiji's Auto Threshold and Auto Local Threshold plugins into ImageJ2. This will have to wait until we have the histogram code in place. Anyhow there is important discussion on this mail list thread:

Change History

comment:1 Changed 2013-02-07T12:39:31-06:00 by bdezonia

  • Blocking 1273 added
  • Blocked By 1203 added

comment:2 Changed 2013-02-07T12:43:02-06:00 by bdezonia

Note that some of the code in the Auto Threshold plugin was ported from GPL code by Antti Nemiesto. Though Gabriel is willing to relicense his plugins BSD we need to get permission to relicense Antti's code too. I have sent him an email (antti.niemisto@…) asking for a BSD relicensing.

comment:3 Changed 2013-02-15T09:43:32-06:00 by bdezonia

Antti has given permission to use his code as BSD licensed software. See

comment:4 Changed 2013-02-15T09:44:20-06:00 by bdezonia

The autothreshold methods of these plugins is already part of IJ2's Threshold command.

comment:5 Changed 2013-02-15T14:38:30-06:00 by bdezonia

  • Blocked By 1203 removed
  • Milestone changed from imagej2-b8-analysis to imagej2-unscheduled

The core of the Auto Threshold plugin has been pulled into IJ2's Threshold plugin. I will leave the Auto Local Threshold to be ported at a later time.

comment:6 Changed 2013-02-15T14:38:47-06:00 by bdezonia

  • Blocking 1273 removed

comment:7 Changed 2013-03-20T11:34:51-05:00 by bdezonia

  • Blocking 1632 added