Ticket #597 (closed defect: fixed)
Opened 2011-06-13T12:56:10-05:00
Last modified 2011-06-15T11:18:43-05:00
Delete Axis can throw an ImgLib exception
| Reported by: | bdezonia | Owned by: | bdezonia |
|---|---|---|---|
| Priority: | major | Milestone: |
|
| Component: | ImgLib2 | Version: | |
| Severity: | serious | Keywords: | |
| Cc: | Blocked By: | ||
| Blocking: |
Description
Open T1 Head. Delete Axis Z with plane == 65 -> works okay
Open T1 Head. Add Axis (channel, 3). Delete Axis Z with plane == 65 -> exception thrown:
Exception in thread "PluginRunner-imagej.core.plugins.restructure.DeleteAxis" java.lang.IllegalArgumentException: incompatible span shapes (case 1)
at net.imglib2.ops.operation.MultiImageIterator.testSpansCompatible(MultiImageIterator.java:98)
at net.imglib2.ops.operation.MultiImageIterator.initialize(MultiImageIterator.java:44)
at imagej.core.plugins.restructure.RestructureUtils.copyHyperVolume(RestructureUtils.java:136)
at imagej.core.plugins.restructure.DeleteAxis.fillNewImgPlus(DeleteAxis.java:164)
at imagej.core.plugins.restructure.DeleteAxis.run(DeleteAxis.java:90)
at imagej.plugin.PluginRunner.run(PluginRunner.java:84)
at imagej.plugin.PluginManager$1.run(PluginManager.java:151)
at java.lang.Thread.run(Thread.java:680)
Change History
comment:1 Changed 2011-06-14T14:29:33-05:00 by bdezonia
comment:3 Changed 2011-06-14T17:02:36-05:00 by bdezonia
found issues in Imglib. have made local changes. tests okay in ImgLib. Made some local changes in IJ2. tests okay for some Process entries (Math, Noise). fails for others (Sharpen, Smooth, Find Edges, Shadows). They may be broken because of some other change. test if currently compiling version on Hudson also fails for those.
comment:4 Changed 2011-06-15T11:15:29-05:00 by bdezonia
- Status changed from new to closed
- Resolution set to fixed
verified others are having same problem with Sharpen etc. without my code changes. will commit my changes.
comment:5 Changed 2011-06-15T11:18:43-05:00 by bdezonia
fixed in 272d5b4c3dd85ca97ae1d41a95667cd2d5941273
Easier way to duplicate: open Organ of Corti. Use Delete Axis and choose channel #1.