Ticket #147 (closed defect: duplicate)
Opened 2010-08-09T12:08:31-05:00
Last modified 2010-10-18T11:19:05-05:00
Bioformats can't open Metamorph z-stack
| Reported by: | leek | Owned by: | leek |
|---|---|---|---|
| Priority: | major | Milestone: |
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| Component: | Analysis Plugins | Version: | |
| Severity: | serious | Keywords: | |
| Cc: | Blocked By: | ||
| Blocking: |
Description
A CellProfiler user submitted a MetaMorph multi-image tiff. It is a z-stack, but the user took two exposures at the same z-height. BioFormats can't load it because the MetamorphTiffReader.java tries to guess the z-count and t-count (code at line 110, roughly) and gets confused by the duplicate z-heights.
The file is retrievable from the CellProfiler SVN:
https://svn.broadinstitute.org/CellProfiler/trunk/TestImages/397_w1447%20laser_s17_t1_bad.TIF
Change History
comment:1 Changed 2010-10-18T11:19:05-05:00 by leek
- Status changed from new to closed
- Resolution set to duplicate
This is being addressed by other work on the 5-channel representation.