ImageJ+MATLAB

Reunited

Mark Hiner, UW-Madison LOCI

Background & Motivation

MIJ Matlab Logo ImageJ1 Logo
Miji.m Matlab Logo Fiji Logo
ImageJ2 Matlab Logo ImageJ2 Logo Orange Brick Wall clip art Fiji Logo

ImageJ-MATLAB

the update site

  • ImageJ.m entry point
  • MATLAB ↔ ImageJ Converters
  • Plugin type: MATLABCommands
  • MATLAB scripting

MATLAB + ImageJ

Starts like Miji

MATLAB + ImageJ

Makes Fiji happy

MATLAB + ImageJ

Adds extensible commands

MATLAB + ImageJ

Uses ImageJ's N-Dimensional data model

MATLAB + ImageJ

Uses ImageJ's N-Dimensional data model

MATLAB + ImageJ

Converters preserve data

ImageJ + MATLAB

MATLAB in the Script Editor

ImageJ + MATLAB

Automatically populate matrix parameters...

ImageJ + MATLAB

... and convert back to images

putting it all together

summary

What's next?

  • More converters
  • More MATLABCommands
  • More templates