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TrackMate-Ilastik

TrackMate-Ilastik.

This page describes a detector module for TrackMate that relies on Ilastik to segment objects in 2D or 3D. It is not included in the core of TrackMate and must be installed via its own update site.

Installation.

For this module to work, you need three things:

  1. Download and Install Ilastik on your machine. Follow the instructions on this page.
  2. Subscribe to the ilastik update site.
  3. And finally, subscribe to the TrackMate-Ilastik update site.

We rely on the capabilities of the ilastik Fiji import/export plugin, built by the ilastik team. It is documented in detail in the ilastik website.