[ImageJ-devel] LOCI crashes with current Fiji build on runtime

[Stephan Preibisch]

Hi,

running the SPIM registration I run into the problem that it is not possible to open images anymore because of a java.lang.NoSuchMethodError (see full exception below): ome.xml.model.Experimenter.setDisplayName(Ljava/lang/String;)V

A similar error (setAcquiredDate instead of setDisplayName) can be reproduced using the Script editor with beanshell and the mitosis.tif (ImageJ example image):

   import loci.formats.ChannelSeparator;
   import loci.formats.MetadataTools;
   import loci.formats.meta.IMetadata;
   import loci.formats.IFormatReader;

   final IFormatReader r = new ChannelSeparator();

   final IMetadata omexmlMeta = MetadataTools.createOMEXMLMetadata();
   r.setMetadataStore( omexmlMeta );
   r.setId( "/Users/preibischs/Desktop/mitosis.tif" );

-> Target exception: java.lang.NoSuchMethodError: ome.xml.model.Image.setAcquiredDate(Ljava/lang/String;)V

Does anyone know why this happens (was fine some days ago)...

Thanks a lot, 
Steffi


java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at ij.Command.runPlugIn(Command.java:146)
	at ij.Command.runCommand(Command.java:95)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.NoSuchMethodError: ome.xml.model.Experimenter.setDisplayName(Ljava/lang/String;)V
	at loci.formats.ome.OMEXMLMetadataImpl.setExperimenterDisplayName(OMEXMLMetadataImpl.java:7386)
	at loci.formats.meta.FilterMetadata.setExperimenterDisplayName(FilterMetadata.java:889)
	at loci.formats.in.ZeissLSMReader.initMetadata(ZeissLSMReader.java:1192)
	at loci.formats.in.ZeissLSMReader.initFile(ZeissLSMReader.java:520)
	at loci.formats.FormatReader.setId(FormatReader.java:1091)
	at loci.formats.ImageReader.setId(ImageReader.java:682)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:492)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:261)
	at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:638)
	at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:583)
	at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:573)
	at mpicbg.imglib.io.LOCI.openLOCIFloatType(LOCI.java:568)
	at fiji.plugin.Bead_Registration.getInteractiveDoGParameters(Bead_Registration.java:673)
	at fiji.plugin.Bead_Registration.getConfiguration(Bead_Registration.java:320)
	at fiji.plugin.Bead_Registration.access$100(Bead_Registration.java:40)
	at fiji.plugin.Bead_Registration$1.dialogItemChanged(Bead_Registration.java:208)
	at ij.gui.GenericDialog.showDialog(GenericDialog.java:1052)
	at fiji.plugin.Bead_Registration.singleChannel(Bead_Registration.java:265)
	at fiji.plugin.Bead_Registration.run(Bead_Registration.java:75)
	at ij.IJ.runUserPlugIn(IJ.java:185)
	at ij.IJ.runPlugIn(IJ.java:152)