[ImageJ-builds] Build failed in Jenkins: JEX-Git-SVN-Mirror #1

jenkins at imagej.net jenkins at imagej.net
Thu Feb 6 14:31:00 CST 2014 

See <http://jenkins.imagej.net/job/JEX-Git-SVN-Mirror/1/>

------------------------------------------
[...truncated 3404 lines...]
	M	JEX/function/experimentalDataProcessing/JEX_CTC_SingleCellQuantification.java
	M	JEX/jex/JEXManager.java
	M	JEX/miscellaneous/StatisticsUtility.java
r151 = ee11f6252b2e2bdb844d45826aa386211b0e7005 (refs/remotes/trunk)
	M	JEX/function/experimentalDataProcessing/JEX_ET_Quantification.java
	M	JEX/.classpath
	M	JEX/Database/DataWriter/RoiWriter.java
r152 = 26d7253c66c73cae5543ac299e73508cc94d3882 (refs/remotes/trunk)
	M	JEX/image/roi/ROIPlus.java
	D	JEX/function/experimentalDataProcessing/JEX_SplitImage.java
	D	JEX/function/experimentalDataProcessing/JEX_RegionIntensityMeasure.java
	D	JEX/function/experimentalDataProcessing/JEX_CalculateIntensityWithMask.java
	D	JEX/function/experimentalDataProcessing/JEX_Stitch_NDRectCoord.java
	D	JEX/function/experimentalDataProcessing/JEX_CropPoints.java
	D	JEX/function/experimentalDataProcessing/JEX_PercentageMaker.java
	D	JEX/function/experimentalDataProcessing/JEX_Stitch_RectCoord.java
	D	JEX/function/experimentalDataProcessing/JEX_MeasureROIRegion.java
	D	JEX/function/experimentalDataProcessing/JEX_MakeROIArray.java
	D	JEX/function/experimentalDataProcessing/JEX_MeasureROIPoints.java
	D	JEX/function/experimentalDataProcessing/JEX_MakeROIArrayManual.java
	D	JEX/function/experimentalDataProcessing/JEX_MeasureROIPointsXY.java
	D	JEX/function/experimentalDataProcessing/JEX_MeasureROIRegion2.java
	D	JEX/function/experimentalDataProcessing/JEX_FileStackToImageStack.java
	D	JEX/function/experimentalDataProcessing/JEX_TrackPoints.java
	D	JEX/function/experimentalDataProcessing/JEX_CountPointsToARFF.java
	D	JEX/function/experimentalDataProcessing/JEX_MeasureROILineSegment.java
	D	JEX/function/experimentalDataProcessing/JEX_RotateImageUsingLine.java
	D	JEX/function/experimentalDataProcessing/JEX_CountPointsInROI.java
	D	JEX/function/experimentalDataProcessing/JEX_MeasureFluorescentIntensityWithMask.java
	D	JEX/function/experimentalDataProcessing/JEX_FindImageAlignments.java
	D	JEX/function/experimentalDataProcessing/JEX_Stitch_Coord.java
	D	JEX/function/experimentalDataProcessing/JEX_CountPoints.java
	D	JEX/function/experimentalDataProcessing/JEX_CropImageUsingROI.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_CalculateIntensityWithMask.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_Stitch_NDRectCoord.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_MakeROIArray.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_MeasureFluorescentIntensityWithMask.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_PercentageMaker.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_CropPoints.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_MeasureROIRegion2.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_FindImageAlignments.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_CountPoints.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_CountPointsToARFF.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_RotateImageUsingLine.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_MakeROIArrayManual.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_CropImageUsingROI.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_MeasureROIPointsXY.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_Stitch_RectCoord.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_MeasureIntensity.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_MeasureROIRegion.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_Stitch_Coord.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_MeasureROIPoints.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_FileToImageStack.java
	M	JEX/function/experimentalDataProcessing/JEX_ET_Quantification.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_MeasureROILineSegment.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_TrackPoints.java
	M	JEX/function/experimentalDataProcessing/JEX_ParticleAnalysis.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_CountPointsInROI.java
	A	JEX/function/experimentalDataProcessing/JEX_ImageTools_SplitImage.java
	A	JEX/function/roitracker/RoiTrackExtend.java
	A	JEX/function/roitracker/RoiTrack.java
	D	JEX/function/imageUtility/ParticleAnalyzer.java
	A	JEX/function/imageUtility/JEXUtility_ParticleAnalyzer.java
	M	JEX/ij/plugin/filter/ParticleAnalyzer.java
	M	JEX/Database/DBObjects/JEXData.java
	M	JEX/Database/SingleUserDatabase/JEXWriter.java
	A	JEX/Database/DataWriter/RoiTrackWriter.java
	A	JEX/Database/DataReader/RoiTrackReader.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_CalculateIntensityWithMask.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_CountPoints.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_CountPointsInROI.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_CountPointsToARFF.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_CropImageUsingROI.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_CropPoints.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_FileStackToImageStack.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_FindImageAlignments.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_MakeROIArray.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_MakeROIArrayManual.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_MeasureFluorescentIntensityWithMask.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_MeasureROILineSegment.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_MeasureROIPoints.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_MeasureROIPointsXY.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_MeasureROIRegion.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_MeasureROIRegion2.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_PercentageMaker.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_RegionIntensityMeasure.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_RotateImageUsingLine.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_SplitImage.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_Stitch_Coord.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_Stitch_NDRectCoord.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_Stitch_RectCoord.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_TrackPoints.java
W: -empty_dir: trunk/JEX/function/imageUtility/ParticleAnalyzer.java
r153 = e7421558fabc114158dd36454b71498859423dbe (refs/remotes/trunk)
	M	JEX/image/roi/ROIPlus.java
	M	JEX/function/roitracker/RoiTrackExtend.java
	M	JEX/function/roitracker/RoiTrack.java
	A	JEX/function/roitracker/RoiTrackMovieMaker.java
r154 = 6c3df236704143bb707ec4f3535b8e89be69a84d (refs/remotes/trunk)
	M	JEX/image/roi/ROIPlus.java
	A	JEX/function/experimentalDataProcessing/JEX_RoiTrack_TrackRois.java
	A	JEX/function/experimentalDataProcessing/JEX_RoiTrack_FindRois.java
	M	JEX/function/roitracker/RoiTrackExtend.java
	M	JEX/function/roitracker/RoiTrack.java
	M	JEX/function/roitracker/RoiTrackMovieMaker.java
	M	JEX/Database/DataWriter/RoiWriter.java
	M	JEX/Database/DataWriter/RoiTrackWriter.java
r155 = 32f61aa6a21787b16ef72fb26e5d6483522b5973 (refs/remotes/trunk)
	M	JEX/function/experimentalDataProcessing/JEX_RoiTrack_TrackRois.java
	A	JEX/function/experimentalDataProcessing/JEX_RoiTrack_AnalyzePointSourceMigration.java
	A	JEX/function/experimentalDataProcessing/JEX_RoiTrack_SelectTracks.java
	A	JEX/function/roitracker/Axis.java
	A	JEX/function/roitracker/HistogramFactory.java
	A	JEX/function/roitracker/FigureFactory.java
	A	JEX/function/roitracker/RoiTrackStatistics.java
	M	JEX/function/roitracker/RoiTrack.java
	M	JEX/function/roitracker/RoiTrackMovieMaker.java
	M	JEX/function/ExperimentalDataCrunch.java
	M	JEX/Database/DBObjects/JEXDataSingle.java
	M	JEX/Database/DataWriter/RoiWriter.java
	M	JEX/Database/DataWriter/RoiTrackWriter.java
	M	JEX/Database/DataReader/RoiTrackReader.java
r156 = 28cb27a579851fc356f8e616de2084ad29238ced (refs/remotes/trunk)
	D	JEX/function/experimentalDataProcessing/JEX_RoiTrack_AnalyzePointSourceMigration.java
	A	JEX/function/experimentalDataProcessing/JEX_RoiTrack_MakeMovie.java
	M	JEX/function/experimentalDataProcessing/JEX_RoiTrack_TrackRois.java
	A	JEX/function/experimentalDataProcessing/JEX_RoiTrack_AnalyzeTracks.java
	M	JEX/function/roitracker/RoiTrackMovieMaker.java
W: -empty_dir: trunk/JEX/function/experimentalDataProcessing/JEX_RoiTrack_AnalyzePointSourceMigration.java
r157 = dbef1d513f9aa8cf27fda12117e9a526fb76876b (refs/remotes/trunk)
	M	JEX/image/roi/PointTester.java
	M	JEX/image/roi/ROIPlus.java
	M	JEX/function/experimentalDataProcessing/JEX_ImageTools_FindImageAlignments.java
	A	JEX/function/experimentalDataProcessing/IJ2/IJ2ROIUtility.java
	A	JEX/function/experimentalDataProcessing/IJ2/IJ2Plugin.java
	A	JEX/function/experimentalDataProcessing/IJ2/IJ2PluginUtility.java
	M	JEX/function/experimentalDataProcessing/JEX_3D_StainingCellQuantification.java
	M	JEX/function/experimentalDataProcessing/JEX_EY_p65_IntensityCalc_NuclearSelect.java
	M	JEX/function/experimentalDataProcessing/JEX_ZVI_to_ImagePlus.java
	M	JEX/function/experimentalDataProcessing/JEX_CTC_SingleCellColocalization.java
	M	JEX/function/experimentalDataProcessing/JEX_Custom_MixingQuantification.java
	M	JEX/function/experimentalDataProcessing/JEX_ParticleAnalysis.java
	M	JEX/function/experimentalDataProcessing/JEX_CTC_SingleCellQuantification.java
	M	JEX/function/experimentalDataProcessing/JEX_Migration_MakeTemplateCell.java
	M	JEX/function/experimentalDataProcessing/JEX_Migration_ExtractImage.java
	M	JEX/function/experimentalDataProcessing/JEX_3D_LiveDead_GroupOfCells.java
	M	JEX/function/roitracker/RoiTrackExtend.java
	M	JEX/function/roitracker/RoiTrackStatistics.java
	M	JEX/function/roitracker/RoiTrack.java
	M	JEX/function/roitracker/RoiTrackMovieMaker.java
	M	JEX/function/singleCellAnalysis/DataPointTracker.java
	M	JEX/function/CrunchFactory.java
	M	JEX/function/tracker/SimpleConvolve.java
	M	JEX/jex/JEXperiment.java
	M	JEX/jex/utilities/ImageUtility.java
	A	JEX/jex/utilities/ROIUtility.java
	M	JEX/.classpath
	M	JEX/miscellaneous/FileUtility.java
	M	JEX/Database/SingleUserDatabase/JEXWriter.java
	M	JEX/updates/Updater.java
	D	JEX/lib/ij.jar
	A	JEX/lib/IJ/jama-1.0.2.jar
	A	JEX/lib/IJ/ij-ui-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/scijava-common-2.7.0.jar
	A	JEX/lib/IJ/ij-scripting-java-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-minimaven-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/serializer-2.7.1.jar
	A	JEX/lib/IJ/jython-2.5.2.jar
	A	JEX/lib/IJ/bcprov-jdk14-138.jar
	A	JEX/lib/IJ/jcommon-1.0.17.jar
	A	JEX/lib/IJ/jdatepicker-1.3.2.jar
	A	JEX/lib/IJ/jai_imageio-1.0.1.jar
	A	JEX/lib/IJ/ij-util-awt-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-platforms-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/bsh-2.0b4.jar
	A	JEX/lib/IJ/ij-updater-webdav-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-scripting-jython-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-app-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/imglib2-ops-2.0.0-beta-22.jar
	A	JEX/lib/IJ/xml-apis-1.3.04.jar
	A	JEX/lib/IJ/ij-text-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/scifio-0.8.1.jar
	A	JEX/lib/IJ/ij-updater-core-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-ui-common-awt-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-tools-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-commands-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-util-swing-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/mapdb-0.9.7.jar
	A	JEX/lib/IJ/itext-2.1.5.jar
	A	JEX/lib/IJ/clojure-1.3.0.jar
	A	JEX/lib/IJ/miglayout-3.7.3.1-swing.jar
	A	JEX/lib/IJ/ij-1.48k.jar
	A	JEX/lib/IJ/object-inspector-0.1.jar
	A	JEX/lib/IJ/imglib2-2.0.0-beta-22.jar
	A	JEX/lib/IJ/markdownj-0.3.0-1.0.2b4.jar
	A	JEX/lib/IJ/bcmail-jdk14-138.jar
	A	JEX/lib/IJ/commons-lang3-3.1.jar
	A	JEX/lib/IJ/jsch-0.1.49.jar
	A	JEX/lib/IJ/javassist-3.16.1-GA.jar
	A	JEX/lib/IJ/imglib2-algorithms-2.0.0-beta-22.jar
	A	JEX/lib/IJ/ij-scripting-jruby-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-ui-swing-tools-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-ui-swing-commands-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-scripting-clojure-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-legacy-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/jfreechart-1.0.14.jar
	A	JEX/lib/IJ/ij-scripting-javascript-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-data-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/jruby-1.6.7.2.jar
	A	JEX/lib/IJ/rsyntaxtextarea-2.0.4.1.jar
	A	JEX/lib/IJ/xalan-2.7.1.jar
	A	JEX/lib/IJ/imglib2-ij-2.0.0-beta-22.jar
	A	JEX/lib/IJ/ij-ui-swing-script-editor-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-core-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/ij-options-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/udunits-4.3.18.jar
	A	JEX/lib/IJ/ij-scripting-beanshell-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/mines-jtk-20100113.jar
	A	JEX/lib/IJ/ij-updater-ssh-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/jhotdraw-7.6.0.jar
	A	JEX/lib/IJ/ij-ui-swing-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/base64-2.3.8.jar
	A	JEX/lib/IJ/eventbus-1.4.jar
	A	JEX/lib/IJ/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar
	A	JEX/lib/IJ/imglib2-meta-2.0.0-beta-22.jar
	A	JEX/lib/IJ/ij-launcher-2.0.2.jar
	M	JEX/tables/DimTable.java
	M	JEX/tables/Table.java
	M	JEX/icons/IconRepository.java
W: -empty_dir: trunk/JEX/lib/ij.jar
r158 = d657890e3c2d8802985260b04cfd166a361c1413 (refs/remotes/trunk)
	M	JEX/image/roi/PointTester.java
	A	JEX/image/roi/ROIPlusUtility.java
	M	JEX/function/experimentalDataProcessing/JEX_ThresholdBGNoise.java
r159 = 533ce291fc39b5cb74328a2d3aefbb4eb2563483 (refs/remotes/trunk)
+ git rev-parse refs/remotes/trunk
533ce291fc39b5cb74328a2d3aefbb4eb2563483
+ git for-each-ref --shell --format %(refname) refs/remotes/
+ sed -e s/^'\(refs\/remotes\/\(.*\)\)'$/'\1:refs\/heads\/svn\/\2'/ -e s/:refs\/heads\/svn\/tags\//:refs\/tags\//
+ args='refs/remotes/trunk:refs/heads/svn/trunk'
+ eval git push "fiji.sc:/srv/git/jex/.git" 'refs/remotes/trunk:refs/heads/svn/trunk'
+ git push fiji.sc:/srv/git/jex/.git refs/remotes/trunk:refs/heads/svn/trunk
fatal: '/srv/git/jex/.git' does not appear to be a git repository
fatal: Could not read from remote repository.

Please make sure you have the correct access rights
and the repository exists.
Build step 'Execute shell' marked build as failure
Build step 'Groovy Postbuild' marked build as failure

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