[ImageJ-bugs] [Bug 1109] Grid/Collection stitching not reading Prairie/Bruker stage location metadata

bugzilla at fiji.sc bugzilla at fiji.sc
Tue Jul 7 15:12:13 CDT 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=1109

Curtis Rueden <ctrueden at wisc.edu> changed:

           What    |Removed                     |Added
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             Status|NEW                         |NEEDSINFO
                 CC|                            |ctrueden at wisc.edu

--- Comment #1 from Curtis Rueden <ctrueden at wisc.edu> ---
Thanks for the report, Jimmy.

It would be good to isolate this behavior to Bio-Formats, by removing ImageJ
from the picture. You can use the showinf command line tool of Bio-Formats,
with the -omexml option, to dump the resultant OME-XML from the Bruker files.
If the stage positions are shown as 0.0 in the XML metadata, then it's a
Bio-Formats issue. And in that case, the problem should be reported to the OME
team:

https://www.openmicroscopy.org/site/support/bio-formats5.1/about/bug-reporting.html

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