[ImageJ-bugs] [Bug 868] New: BF does not open some .stk file correctly

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=868

            Bug ID: 868
           Summary: BF does not open some .stk file correctly
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: All
            Status: NEW
          Severity: normal
          Priority: P5
         Component: Bio-Formats
          Assignee: imagej-bugs at imagej.net
          Reporter: marelo64 at gmail.com

Created attachment 185
  --> http://fiji.sc/bugzilla/attachment.cgi?id=185&action=edit
Contain file1.stk and file2.stk

Note that I use a recent IJ/Fiji version (and the bug has also been noticed
with an older IJ version few months ago).

Some .stk files are not correctly detected by BF and IJ open them with two axes
(Z and T) while only one exist. Examples (axes order is T, Z, X, Y, C) :

- file1.stk : real shape = (10, 1, 264, 268, 1), BF detected shape = (5, 2,
264, 268, 1)

- file2.stk (with several channels): real shape = (10, 1, 139, 224, 3), BF
detected shape = (5, 2, 139, 224, 3)

Both files have been saved from Metamorph after a z-projection (I bet the issue
comes from here).

They open well on different Metamorph versions and also tifffile.py lib detects
the correct shapes.

If you this place is not appropriate for this kind of bug, feel free to
redirect me to the right place.

Both files are in the attachment file called stk_files.zip

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