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2011-12-14 - Fiji Hackathon in Dresden

A great Fiji hackathon took place between Saturday, December 10 and Sunday, December 18, 2011 at the MPI-CBG, which besides hosting also provided generous sponsoring of food and accommodation, and again brought together biologists and developers associated with the various bioimage analysis projects.


The topic was Integration, including: Fiji + ImageJ2, OMERO + ImageJ, KNIME + ImageJ, Icy + ImageJ, OMERO + Icy, KNIME + OMERO and more.

This is the hackathon where the SciJava idea was originally born!


There were 25 people participating at various times, though only a few stayed for the entire duration.

Here is the list of participants together with their primary affiliation:

Kevin Eliceiri ImageJ2
Curtis Rueden IJ2/Fiji
Barry DeZonia IJ2
Johannes Schindelin Fiji
Christian Dietz KNIME
Martin Horn KNIME
Melissa Linkert OME (Bio-Formats)
Erwin Frise Fiji/uManager
Mark Longair Fiji
Josh Moore OMERO
Jean-Marie Burel OMERO
Jurgen Mayer CRG Barcelona
Stephan Preibisch Fiji/ImgLib
Benjamin Schmid Fiji/3D Viewer
Pavel Tomancak Fiji
Daniel James White Fiji/Coloc 2/SPIM
Michael Doube Fiji/BoneJ
Tobias Pietzsch Fiji/ImgLib
Peter Pitrone SPIM
Fernando Carrillo Fiji
Fabrice de Chaumont Icy
Stephane Dallongeville Icy
Alex Krull Fiji
Jiri Matas Computer Vision (Prague) special guest
Boris Flach Computer Vision (Prague) special guest


The following chart illustrates when everyone was present:

Preset = TimeHorizontal\_AutoPlaceBars\_UnitYear ImageSize = width:500 Colors = ` id:c01 value:blue` ` id:c02 value:red` ` id:c03 value:green` ` id:c04 value:black` ` id:c05 value:magenta` ` id:c06 value:teal` ` id:c07 value:yelloworange` ` id:c08 value:skyblue` ` id:c09 value:claret` ` id:c10 value:oceanblue` ` id:c11 value:purple` ` id:c12 value:powderblue` ` id:c13 value:coral` ` id:c14 value:redorange` ` id:c15 value:kelleygreen` ` id:c16 value:orange` ` id:c17 value:lightpurple` ` id:c18 value:tan2` ` id:gridLine value:gray(0.5)` ` id:gridCanvas value:gray(0.8)` BackgroundColors = canvas:gridCanvas Period = from:9 till:19 ScaleMajor = unit:year increment:1 start:9 grid:white LineData = ` at:9 color:gridLine layer:back width:0.5` ` at:10 color:gridLine layer:back width:0.5` ` at:11 color:gridLine layer:back width:0.5` ` at:12 color:gridLine layer:back width:0.5` ` at:13 color:gridLine layer:back width:0.5` ` at:14 color:gridLine layer:back width:0.5` ` at:15 color:gridLine layer:back width:0.5` ` at:16 color:gridLine layer:back width:0.5` ` at:17 color:gridLine layer:back width:0.5` ` at:18 color:gridLine layer:back width:0.5` ` at:19 color:gridLine layer:back width:0.5` BarData= ` barset:Hackers` PlotData= ` width:15 ` ` fontsize:M` ` textcolor:white` ` align:left ` ` anchor:from ` ` shift:(4,-4) ` ` color:black` ` barSet:Hackers` ` color:c01 from:13 till:18 text:"Kevin Eliceiri"` ` color:c02 from:12 till:18 text:"Erwin Frise"` ` color:c03 from:12 till:15 text:"Fabrice de Chaumont"` ` color:c04 from:12 till:15 text:"Stephane Dallongeville"` ` color:c05 from:12 till:13 text:"Jiri Matas"` ` color:c06 from:11 till:19 text:"Johannes Schindelin"` ` color:c07 from:11 till:16 text:"Benjamin Schmid"` ` color:c08 from:11 till:15 text:"Jean-Marie Burel"` ` color:c09 from:10 till:18 text:"Mark Longair"` ` color:c10 from:10 till:18 text:"Jurgen Mayer"` ` color:c11 from:10 till:17 text:"Christian Dietz"` ` color:c12 from:10 till:16 text:"Martin Horn"` ` color:c13 from:9 till:19 text:"Dresden Locals*"` ` color:c14 from:9 till:18 text:"Curtis Rueden"` ` color:c15 from:9 till:18 text:"Barry DeZonia"` ` color:c16 from:9 till:18 text:"Melissa Linkert"` ` color:c17 from:9 till:18 text:"Stephan Preibisch"` ` color:c18 from:9 till:15 text:"Josh Moore"`

* Dresden locals include:

  • Fernando Carrilo
  • Michael Doube
  • Tom Kazimiers
  • Alex Krull
  • Tobias Pietzsch
  • Peter Pitrone
  • Daniel James White
  • Pavel Tomancak

Some locals were not present at the hackathon on weekends.