Cookbook
| Cookbook Topics | |
|---|---|
| Introduction and Installation | |
| Annotating Images | |
| Color Image Processing | |
| Deconvolution | |
| Image Intensity Processing | |
| Importing Image Files | |
| Particle Analysis | |
| Saving and Exporting | |
| Stack-slice Manipulations | |
| T-functions | |
| Z-functions | |
This book is an analysis-oriented introduction and user guide to ImageJ. It is inspired by the defunct MBF "ImageJ for microscopy" manual which went offline in November 2012, and it describes many of the same plugins from that distribution.
Cooks call them recipes, biologists protocols, and programmers call them HOWTOs. No matter how you refer to them, you'll find the book topics in the sidebar to the right!
Like the rest of this wiki, this Cookbook is a community project. Please feel welcome to edit and expand the material here!
Installing ImageJ
The Cookbook is based on the Fiji distribution of ImageJ.
| Error creating thumbnail: Unable to save thumbnail to destination ~ Download Fiji for your OS ~ Error creating thumbnail: Unable to save thumbnail to destination
| ||
|---|---|---|
 64-bit |
 macOS |
 64-bit |
| Other downloads | ||
| 32-bit
|
 No JRE
|
32-bit
|
Installing the Cookbook plugins
| From the Fiji menu, select Help › Update... | |
| Click the Manage update sites button | |
| Check the Cookbook update site | |
| Close the Manage update sites dialog | |
| Click Apply changes to download the Cookbook plugins | |
| Restart Fiji to complete the plugin installation | |
| Enjoy your new plugins from the Cookbook menu! | |
Source
The source code is on GitHub.
Credits
The Cookbook pages themselves were adapted from the defunct MBF "ImageJ for microscopy" manual, originally created by Tony Collins.
The Cookbook technical writer team includes:
- Curtis Rueden (technical oversight and maintenance)
- Aparna Pal (January 2014 - May 2015)
- Johannes Schindelin (June 2013 - November 2014)
- Katie Hildebrand (June 2013 - December 2013)
- Amanda MacAllister (June 2013 - December 2013)
- Ruizhi "Ray" Liao (November 2013 - December 2013)
- Gabby Campagnola (June 2013 - August 2013)
The plugins featured in the Cookbook were collated from various sources and have various authors and licenses.
