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SPIMage processing course

    Practical course on SPIM image processing

    Hardware requirements

    The overview of hardware requirements for SPIMage processing can be found here.

    Standalone

    Cluster

    Software requirements

    Sample data

    OpenSPIM

    Lightsheet Z1

    Course outline

    Installation

    Pre-processing

    Multi-view registration - single time-point

    Multi-view fusion - single time-point

    Time lapse registration

    Time lapse fusion

    Big Data Viewer

    3d rendering