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Learnathon 2018

    The second DAIS Learnathon took place from June 3 until June 9 2018.
    This page is the Learnathon Wiki page of last year’s event!


    See this page!

    Setting up your system

    Check if you have this set up:

    • Eclipse (Neon)
    • bash / zsh
    • GIT
    • Maven
    • Gitter


    Intro session…

    See slides!

    Start a Maven project with Eclipse

    See slides

    Git repos to clone:

    • git@github.com:imagej/example-imagej-command.git

    Notes: In case you want to switch to the legacy UI (ImageJ 1), you change the dependencies section in your POM to…


    Introduction to ImgLib2

    Git repos to clone:

    (Slides are contained in the repository.)


    ImageJ2 and SciJava

    ImageJ2 Ops

    ImageJ Legacy

    The ImageJ Legacy Course covered the topics: images, tables, regions of interest and command execution.

    Jupyter Notebooks


    • See the Git page!


    KNIME Usage

    • Download and install the KNIME Analytics Platform from here

    KNIME Development Introduction

    • Make sure you have Eclipse Oxygen installed
    • Clone https://github.com/knime-ip/knip-sdk-setup
    • Clone https://github.com/knime-ip/knip-course

    Developing ImageJ Ops

    • Clone https://github.com/imagej/tutorials (but you already have it, right?)
    • Import maven-projects/create-a-new-op in Eclipse.
    • See also the Adding new ops guide
    • See also the “Extending ImageJ: Ops” notebook linked from here

    ImageJ Server


    ClearVolume and BDV VisTools

    scenery & SciView

    KNIME ImageJ2 Integration


    Imglib2 Algorithm

    Imglib2 Advanced