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IsletJ

    Name

    IsletJ

    Software

    ImageJ

    Author

    Jan Švihlík and Jan Schier

    Maintainer

    Jan Schier

    Status

    Active

    IsletJ is a plugin for analysis of microscopy images of Langerhans islets in ImageJ. It provides free, open source tool for analysis of islets diameter and number and for estimation of sample purity (ratio of endocrine/exocrine tissue area).

    Installation

    IsletJ was designed to work with plain ImageJ 1.x. It requires Java-8.

    The simplest way to install the plugin is using the Fiji installer>

    • Download current version of Fiji from here
    • Launch Fiji and run Updater Help › Update…

    • In ImageJ Updater select Manage update sites

    • In Manage update sites select IsletJ and then Close

    • In ImageJ Updater select Apply changes

    • Restart Fiji

    Documentation

    User documentation in PDF format is available at github

    Publication

    • Habart D., Švihlík J., Schier Jan, Cahová M., Girman P., Zacharovová K., Berková Z., Kříž J., Fabryová E., Kosinová L., Papáčková Z., Kybic J., Saudek F. : Automated Analysis of Microscopic Images of Isolated Pancreatic Islets , Cell Transplantation vol.25, 12 (2016), p. 2145-2156, DOI https://doi.org/10.3727/096368916X692005