GenericDialog class is part of ImageJ1 and can be used to make simple graphical user interfaces for scripts and plugins. It requires a bit more of work than with the script parameters option but offers more possibilities.
Fiji offers an additional GenericDialogPlus subclass which include additional GUI item like a file input with a browse button.
Like the script parameters, plugins using the Generic Dialog (or one of its subclass) are macro recordable.
In Jython (or similar scripting language)
Here is an example in Jython.
from ij.gui import GenericDialog # Create an instance of GenericDialog gui = GenericDialog("My first GUI") # Add some gui elements (Ok and Cancel button are present by default) # Elements are stacked on top of each others by default (unless specified) gui.addMessage("Some information to display at the top of the gui") gui.addStringField("Type some input text :", "initial text") gui.addCheckbox("This is a tickbox->Activate some option", True) # We can add elements next to each other using the addToSameRow method gui.addToSameRow() # The next item is appended next to the tick box gui.addChoice("Choose one option among a list", ["Choice1", "Choice2"], "Choice1") # Choice1 is default here gui.addNumericField("Some integer", 10, 0) # 0 for no decimal part # Add a Help button in addition to the default OK/Cancel gui.addHelp(r"https://imagej.net/Generic_dialog") # clicking the help button will open the provided URL in the default browser # Show dialog, the rest of the code is not executed before OK or Cancel is clicked gui.showDialog() # dont forget to actually display the dialog at some point # If the GUI is closed by clicking OK, then recover the inputs in order of "appearance" if gui.wasOKed(): inString = gui.getNextString() inBool = gui.getNextBoolean() inChoice = gui.getNextChoice() # one could alternatively call the getNextChoiceIndex too inNum = Win.getNextNumber() # This always return a double (ie might need to cast to int)
In the macro language
There are 2 options to generate a GUI in the ImageJ macro language.
The first option is convenient if only a single or few parameters are requested.
It will open a dedicated input window for every parameter requested ie if there are multiple parameters, several windows will successively show up.
someNumber = getNumber("Some number", 0); // 0 is the default here someString = getString("Some string", "DefaultValue");
The list of possible inputs is the same than for the second option with the Dialog.
Using Dialog (the 2nd option), a single input window will show up with all parameters. This requires a little bit more coding than the 1st option, but is more elegant.
Dialog.create("My inputs"); Dialog.addMessage("Some message to display"); var min = 0; var max = 10; var default = 5; Dialog.addSlider("Some slider", min, max, default); Dialog.addNumber("Some number", 0); Dialog.addString("Some string", "DefaultString"); Dialog.addChoice("Type:", newArray("8-bit", "16-bit", "32-bit", "RGB")); Dialog.addCheckbox("Ramp", true); // One can add a Help button that opens a webpage Dialog.addHelp("https://imagej.net/macros/DialogDemo.txt"); // Finally show the GUI, once all parameters have been added Dialog.show(); // Once the Dialog is OKed the rest of the code is executed // ie one can recover the values in order of appearance inNumber1 = Dialog.getNumber(); // Sliders are number too inNumber2 = Dialog.getNumber(); inString = Dialog.getString(); inChoice = Dialog.getChoice(); inBoolean = Dialog.getCheckbox(); print("Number1:", inNumber1); print("Number2:", inNumber2); print(inString); print("Choice:", inChoice); print("Do something (1=True, 0=False):", inBoolean);
See the section “Dialog” of the Macro functions reference for more details.
Image and file inputs
By default, script and plugins process the last selected image.
However sometime one needs to specify different images or files as input.
The subclass GenericDialogPlus provides a couple of handful methods for such cases, while all methods shown above are inherited from the GenericDialog class.
from fiji.util.gui import GenericDialogPlus # Create an instance of GenericDialogPlus gui = GenericDialogPlus("an enhanced GenericDialog") # Add possibility to choose some images already opened in Fiji gui.addImageChoice("Image1","Some description for image1") gui.addImageChoice("Image2","Some description for image2") # The GenericDialogPlus also allows to select files, folder or both using a browse button gui.addFileField("Some_file path", "DefaultFilePath") gui.addDirectoryField("Some_folder path", "DefaultFolderPath") gui.addDirectoryOrFileField("Some_Path", "DefaultPath") gui.showDialog() # Recover the inputs in order of "appearance" if gui.wasOKed(): ImpImage1 = gui.getNextImage() # This method directly returns the ImagePlus object ImpImage2 = gui.getNextImage() # Path are recovered as string FilePath = gui.getNextString() FolderPath = gui.getNextString() SomePath = gui.getNextString()
Just like script parameters, plugins using the GenericDialog class are macro-recordable.
One important thing to note is the name of the variable in the recorded command. This name is actually the first word of the string used as label for each item, with lowercase letters only.
A single word is not very intuitive to understand a parameter in most cases. To include the next words of the label in the recorded command replace the space with underscores, as in
For instance the previous code saved as
Fiji.app/scripts/Plugins/Test yields the following recorded command:
run("GUI ", "image1=MyImage1.tif image2=MyImage2.tif some_file=DefaultFilePath some_folder=DefaultFolderPath some_path=DefaultPath");
Recalling previous entries using the PrefService
It is convenient to have the previously entered parameters recalled at the next run of a given plugin. This is happening automatically for Script parameters (unless specified differently) but not for the GenericDialog class.
Fortunately, it is still possible to make it works using the PrefService.
Services are some ImageJ2/SciJava features that can be though of as some kind of package import at runtime. They are not available in a plain ImageJ1, thus an alternative to recall parameter in ImageJ1 is to use a temp file to store the previously entered parameters.
Here’s the link to the PrefService.
And below is a Jython example of how to use it.
#@ PrefService prefs from fiji.util.gui import GenericDialogPlus # Create GUI gui = GenericDialogPlus("Some GUI") gui.addImageChoice("Image", prefs.get(None, "Image", "DefaultImage") ) gui.addCheckbox("Activate some option", prefs.getInt(None, "doOption", False) ) # in theory we should use the getBoolean method but it does not work for Jython, the wrong method signature is matched gui.addStringField("Some_string", prefs.get(None, "someString", "initial")) gui.addChoice("Some_choice", ["Choice1","Choice2"], prefs.get(None, "someChoice", "DefaultChoice")) gui.addNumericField("Some_integer", prefs.getInt(None, "N", 1), 0) gui.addNumericField("Some_float", prefs.getFloat(None, "Decimal", 0.5), 2) gui.showDialog() if gui.wasOKed(): image = gui.getNextImage() doOption = gui.getNextBoolean() someString = gui.getNextString() someChoice = gui.getNextChoice() N = int(gui.getNextNumber()) # cast to int : getNextNumber always return a double Decimal = gui.getNextNumber() # Save in memory using PrefService prefs.put(None, "Image", image.getTitle()) prefs.put(None, "doOption", doOption) prefs.put(None, "someString", someString) prefs.put(None, "someChoice", someChoice ) prefs.put(None, "N", N) prefs.put(None, "Decimal", Decimal)
The first step is to “import” the PrefService and to assign it a name, here prefs.
Then there are 2 methods to respectively recover and store some parameter values from the PrefService, namely
Let’s start with
get. This method is define for the different datatype
getBoolean. An exception for String there is no
Also in Jython the
getBoolean method is not mapping the right Java signature, so use
getInt instead as illustrated above.
There are 3 arguments for the
- The Plugin class for which to associate the parameter persistence. Leave it None (or Null in other languages) to use the default.
- The name of the variable to recall from memory/the preferences, it should be the same name used by the
putmethod for that parameter.
- The default value to use if no variable with such name exist in memory ie the first time you run your script or if you reset the preferences.
put is even simpler as there is only a single method that takes also 3 arguments:
- Like for
getan optional Plugin class
- The name used to store the parameter value in memory/in the preferences, it is the same name used by
getto recover the previously entered value.
- The value to store in memory with the name in argument 2. If the parameter was already existing in memory the value is updated to this newly provided value.
Therefore in the script above, the default values for the GenericDialog fields are initialized to the values available in memory, or some default values if there are missing in memory.
Once the GUI is oked, the values in memory are updated with the newly typed values, using the
Using the GenericDialogPlus provided with Fiji, it is possible to add custom buttons and associated actions to a GUI.
To do so, we have to import the ActionListener interface from
We then create a class that implements this interface, and that contains a single method named
actionPerformed, which will be called anytime the user interacts with an item that is linked to this event-listening class, like a button.
In the folloguig jython example, we define 2 buttons A and B, both associated to the same event-handling class named
If any of the button is clicked, the
actionPerformed method of
ButtonClic is called. However the source of the event is different (button A or B), and thus we can define different commands to execute for each case.
For more complicated cases, one could also create different event-handling classes to assign to different set of GUI items.
from fiji.util.gui import GenericDialogPlus from java.awt.event import ActionListener class ButtonClic(ActionListener): '''Class which unique function is to handle the button clics''' def actionPerformed(self, event): # self (or this in Java) to state that the method will be associated to the class instances # Check from where comes the event Source = event.getSource() # returns the Button object print Source # Do an action depending on the button clicked if Source.label == "A": print "You clicked A\n" elif Source.label == "B": print "You clicked B\n" gui = GenericDialogPlus("GUI with custom buttons") gui.addButton("A", ButtonClic() ) # We associate the button objects to some instance of the ButtonClic class gui.addButton("B", ButtonClic() ) gui.showDialog()