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Featured Fiji Projects

    Fiji is home to quite a few nice ImageJ plugins! Here is a non-exhaustive list:

    3D Viewer

    • Hardware-accelerated 3D volume and mesh visualization, and 3D registration of image stacks.

    Transform

    Image registration

    Segmentation

    Tracking

    Analysis

    ImgLib2

    • Generic and extensible n-dimensional image processing library for Java.

    TrakEM2

    • Register/edit/analyze/segment/annotate/3D model terabytes of confocal and electron microscopy images.

    The core of Fiji.