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    TODO platformsmenu:

    This book is an analysis-oriented introduction and user guide to ImageJ. It is inspired by the defunct MBF “ImageJ for microscopy” manual which went offline in November 2012, and it describes many of the same plugins from that distribution.

    Cooks call them recipes, biologists protocols, and programmers call them HOWTOs. No matter how you refer to them, you’ll find the book topics in the sidebar to the right!

    Like the rest of this wiki, this Cookbook is a community project. Please feel welcome to edit and expand the material here! <div class="toc"></div>

    Installing ImageJ

    The Cookbook is based on the Fiji distribution of ImageJ. TODO downloadfiji:

    Installing the Cookbook plugins

    From the Fiji menu, select Help › Update...


    Click the Manage update sites button


    Check the Cookbook update site


    Close the Manage update sites dialog

    Click Apply changes to download the Cookbook plugins


    Restart Fiji to complete the plugin installation

    Enjoy your new plugins from the Cookbook menu!



    The source code is on GitHub .


    The Cookbook pages themselves were adapted from the defunct MBF “ImageJ for microscopy” manual, originally created by Tony Collins.

    The Cookbook technical writer team includes:

    The plugins featured in the Cookbook were collated from various sources and have various authors and licenses.