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ClearVolume

    Name

    ClearVolume

    Software

    Fiji

    Author

    Florian Jug , Loic Royer , Martin Weigert, skalarproduktraum

    Maintainer

    Florian Jug

    Source

    on GitHub

    Status

    active

    Category

    Visualization

    == Problems and Solutions == We work constantly on improving the Fiji and KNIME plugins. Help us doing so by letting us know if you encounter problems.

    • Problem: on a Mac, after ClearVolume opens in Fiji I see a large grey area where the 3D viewer should be.
    • Solution: we work on a fix… so far, double click on the grey area to switch to full screen, then double click again to go back to window mode.

    What is ClearVolume?

    TODO testimonial: {"quote"=>"I checked out ClearVolume. Extremely well-made plugin! Does exactly what I want :)", "person"=>"komodovaran", "source"=>"http://forum.imagej.net/t/1907/3", "width"=>"30%", "float"=>"right"} ClearVolume is a volume renderer developed at MPI-CBG. Its sources are open and can be cloned from GitHub. If you use ClearVolume in your research, please cite it—see reference below.

    Screenshots

    The main ClearVolume plugin can render volumetric multi-channel data. Channel LUTs, transparency, rendering quality, etc. can easily be set in the plugins user interface. We thank Tzumin Lee's group at Janelia for being allowed to use their twin-spot MARCM (Yu et al., Nature Neuroscience, 2009) labeled neurons.
    The ClearVolume network client can be started from Fiji/ImageJ2 and enables users to receive volumetric data from a remote source, e.g. live from a microscope in the basement of your collaborators institute.

    See ClearVolume in action!