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CellProfiler

    Plugin
    Name

    CellProfiler

    Software

    CellProfiler

    Author

    Broad Institute of MIT and Harvard

    Maintainer

    Broad Institute of MIT and Harvard

    Source

    on GitHub

    Status

    active

    CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

    Publications

    Carpenter, A. E.; Jones, T. R. & Lamprecht, M. R. et al. (2006 Oct 31), “CellProfiler: image analysis software for identifying and quantifying cell phenotypes”, Genome Biology 7(10): R100, PMID 17076895, doi: (on Google Scholar).

    Kamentsky, L.; Jones, T. R. & Fraser, A. et al. (2011 Feb 23), “Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software”, Bioinformatics 27(8): 1179-1180, PMID 21349861, doi: (on Google Scholar).

    McQuin, C.; Goodman, A. & Chernyshev, V. et al. (2018 Jul 3), “CellProfiler 3.0: Next-generation image processing for biology”, PLOS Biology 16(7): e2005970, PMID 29969450, doi: (on Google Scholar).