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CARE

    TODO component: {"project"=>"CSBDresden", "name"=>"CARE Fiji Plugin", "url"=>"https://imagej.net/CARE", "source"=>"\n<a class=\"github\" href=\"https://github.com/CSBDeep/CSBDeep\\_fiji/releases/tag/csbdeep-0.3.4\">on GitHub</a>\n\n", "license"=>"[BSD-2](BSD-2)", "release"=>"\n<span class=\"include maven\">TODO maven: {\"g\"=>\"de.csbdresden\", \"a\"=>\"csbdeep\", \"v\"=>\"0.3.4\", \"label\"=>\"0.3.4\"}</span>\n\n", "date"=>"Tue Dec 11 00:00:00 CDT 2018", "devStatus"=>"\n<span class=\"include devstatus\">TODO devstatus: {\"developer\"=>\"yes\", \"incubating\"=>\"yes\", \"obsolete\"=>\"no\"}</span>\n\n", "supportStatus"=>"\n<span class=\"include supportstatus\">TODO supportstatus: {\"debugger\"=>\"yes\", \"reviewer\"=>\"yes\", \"support\"=>\"yes\"}</span>\n\n", "founders"=>"\n<a class=\"person\" href=\"https://github.com/frauzufall\">Deborah Schmidt</a>\n\n", "leads"=>"\n<a class=\"person\" href=\"https://github.com/frauzufall\">Deborah Schmidt</a>\n, <a class=\"person\" href=\"https://github.com/HedgehogCode\">Benjamin Wilhelm</a>\n, <a class=\"person\" href=\"https://github.com/fjug\">fjug</a>\n\n", "developers"=>"\n<a class=\"person\" href=\"https://github.com/frauzufall\">Deborah Schmidt</a>\n, <a class=\"person\" href=\"https://github.com/HedgehogCode\">Benjamin Wilhelm</a>\n, <a class=\"person\" href=\"https://github.com/fjug\">fjug</a>\n\n", "debuggers"=>"\n<a class=\"person\" href=\"https://github.com/frauzufall\">Deborah Schmidt</a>\n, <a class=\"person\" href=\"https://github.com/HedgehogCode\">Benjamin Wilhelm</a>\n\n", "reviewers"=>"\n<a class=\"person\" href=\"https://github.com/frauzufall\">Deborah Schmidt</a>\n, <a class=\"person\" href=\"https://github.com/HedgehogCode\">Benjamin Wilhelm</a>\n\n", "support"=>"\n<a class=\"person\" href=\"https://github.com/frauzufall\">Deborah Schmidt</a>\n, <a class=\"person\" href=\"https://github.com/HedgehogCode\">Benjamin Wilhelm</a>\n\n", "maintainers"=>"\n<a class=\"person\" href=\"https://github.com/frauzufall\">Deborah Schmidt</a>\n, <a class=\"person\" href=\"https://github.com/tpietzsch\">tpietzsch</a>\n, <a class=\"person\" href=\"https://github.com/HedgehogCode\">Benjamin Wilhelm</a>\n\n"}

    Install

    ImageJ update site

    The CSBDeep plugin can be installed from the ImageJ update site 1. See the CSBDeep Wiki Pages for more details.

    From source

    1. Clone this repository.
    2. Run the following command from inside the repo:

    mvn -Dimagej.app.directory=/path/to/Fiji.app/ -Ddelete.other.versions=true

    Run demos

    1. Download the exemplary image data
    2. Open Fiji.
    3. Open an example image, e.g. `tribolium.tif`.
    4. Run the plugin via `Plugins > CSBDeep > Demo`.
    5. Run the plugin by pressing `Ok`.

    If all goes well, an image will be displayed representing the result of the model execution.

    See the CSBDeep Wiki Pages for more details.

    Run your own model

    1. Use the python code to train your network with your data. Export it as ZIP.
    2. Open Fiji.
    3. Open an image.
    4. Run the plugin for any network via `Plugins > CSBDeep > Run your network`.
    5. Load your exported network by pressing `Browse` on the `Import model (.zip)` line.
    6. Run the plugin by pressing `Ok`.

    If all goes well, an image will be displayed representing the result of the model execution.

    See the CSBDeep Wiki Page for more details.

    GPU support

    Please read this page for GPU support.

    License

    This project is licensed under the BSD 2-clause “Simplified” License – see the LICENSE.txt file for details.