# 3D Objects Counter

TODO component: {"content"=>"sc.fiji:3D\\_Objects\\_Counter"}

## What does it do ?

This plugin:

• counts the number of 3D objects in a stack.
• quantifies for each found object the following parameters:
• Integrated density;
• Mean of the gray values;
• Standard deviation of the gray values;
• Minimum gray value;
• Maximum gray value;
• Median of the gray values;
• Mean distance from the geometrical centre of the object to surface;
• Standard deviation of the distance to surface;
• Median distance to surface;
• Centroid;
• Centre of mass;
• Bounding box.
• generates results representations such as:
• Objects’ map;
• Surface voxels’ map;
• Centroids’ map;
• Centres of masses’ map.

As ImageJ’s “Analyze Particles” function, 3D-OC also has a “redirect to” option, allowing one image to be taken as a mask to quantify intensity related parameters on a second image.