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2013-05-03 - SPIMage processing recipes for a cluster

    Time-lapse SPIM imaging produces ridiculous amounts of data and the way to deal with the data deluge is to process the timepoints in parallel on a cluster.

    Pavel Tomancak wrote recipes for launching Fiji’s SPIM registration, fusion, deconvolution and rendering plugins on the MPI-CBG cluster. They should be easily adaptable to other cluster environments.

    The pipeline was developed for processing of data from the commercial SPIM solution - Lightsheet Z.1 from Zeiss.

    It would be nice if other’s contribute their scripts and experience…